Symphalangus syndactylus (siamang): 129487518
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Entry
129487518 CDS
T10134
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129487518 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129487518 (CPSF2)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129487518 (CPSF2)
U7-dependent histone pre-mRNA processing factors
129487518 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
129487518
NCBI-ProteinID:
XP_055144346
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Position
8:complement(24851123..24894103)
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDIEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctttctggggtccaagaagaatctgccctttgc
tatcttctccaagttgatgagttcagatttttattggactgtggctgggatgagcacttt
tctatggatattattgattccctgaggaagcatgttcaccagattgatgcagtgctgttg
tcacaccctgatcctctccaccttggtgccctcccgtatgctgtcggaaagttgggtctg
aactgtgctatctatgcaaccattcctgtttataaaatgggacagatgttcatgtatgat
ctttatcagtctcgacacaatacagaagattttacactctttacattagatgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcctgtctatcacacctctgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttatgcagttgacttcaaccacaagagg
gagatccatttaaatggatgttccctggaaatgctaagcaggccttccctacttatcaca
gattcattcaatgctacatatgtacagcctagaagaaaacagagagatgagcagcttctg
acaaatgtcctggaaacacttcgaggtgatggaaatgtgttaatagcagtggacacagca
ggcagagttttggaacttgctcaacttcttgatcagatttggaggactaaagatgcagga
ttgggtgtttactcattggcactcctaaataatgtcagttacaatgtggtggaattttct
aagtctcaggtagaatggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aatccgtttcagtttcgccatctctctttatgtcatggtctttctgacttggcccgagta
cctagccctaaagttgtacttgccagccaacctgacctggaatgtggattttcaagggat
ctctttattcagtggtgtcaggaccctaaaaactcaatcattctaacttacagaactact
cctgggactttagcacgtttcctaattgataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaagcttgaagggaaagaacttgaagaatacttggaaaaagagaaa
ctaaagaaagaagctgccaaaaagcttgagcagtcaaaagaggcagatatagattccagt
gatgagagtgacattgaggaagatattgaccagccatcagctcataagatgaagcatgac
ttgatgatgaaaggtgaaggcagtcgtaaaggaagttttttcaaacaggcaaaaaagtcc
tatcctatgtttcctgccccagaagaaagaattaaatgggatgaatacggagagattatc
aaaccagaggatttcttagtgccagagcttcaagctactgaagaagaaaaaagcaaatta
gaatctggtttgacaaatggagatgaacctatggatcaggatttatctgatgttcctact
aaatgtatttctacaacagagtctattgaaataaaagcccgggttacctacatagactat
gaaggacgctctgatggggattccattaaaaaaatcattaatcagatgaaaccacgacag
ttgatcatcgtccatggcccaccagaggccagtcaagatctggcagagtgctgtcgcgcc
tttggtgggaaagatattaaagtgtacatgccaaagctacatgaaacagttgatgccact
agtgaaactcacatctaccaggtgaggttaaaagactcacttgtcagctctcttcagttt
tgtaaggcaaaagatgctgaattagcttggatagatggtgtcttagatatgagagtttcc
aaagtggacacaggggttattttagaagaaggagaactaaaggatgatggagaagactca
gagatgcaagtggaagctccctcagattctagcgttatagcacaacaaaaggccatgaaa
agtctgttcggagatgatgaaaaagaaacaggtgaagaaagtgagatcattcctactttg
gaacccttgccacctcatgaggttcctggacatcagtcagtttttatgaatgaaccaaga
ctgtcagacttcaagcaagttctcttacgggaggggattcaagctgaatttgtaggaggt
gtacttgtttgcaacaatcaagtagcagtccgcagaacggaaactggacgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacaatatgcc
attgtataa
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