Symphalangus syndactylus (siamang): 129488144
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Entry
129488144 CDS
T10134
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03008
Ribosome biogenesis in eukaryotes
ssyn03013
Nucleocytoplasmic transport
ssyn03015
mRNA surveillance pathway
ssyn05014
Amyotrophic lateral sclerosis
ssyn05164
Influenza A
ssyn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129488144 (NXF1)
03015 mRNA surveillance pathway
129488144 (NXF1)
03008 Ribosome biogenesis in eukaryotes
129488144 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
129488144 (NXF1)
05168 Herpes simplex virus 1 infection
129488144 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
129488144 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129488144 (NXF1)
03009 Ribosome biogenesis [BR:
ssyn03009
]
129488144 (NXF1)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129488144 (NXF1)
mRNA cycle factors
Stress granule specific factors
129488144 (NXF1)
Ribosome biogenesis [BR:
ssyn03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
129488144 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
129488144
NCBI-ProteinID:
XP_055145955
LinkDB
All DBs
Position
1:complement(91409963..91424477)
Genome browser
AA seq
619 aa
AA seq
DB search
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL
DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
AFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS
SEETQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTHLKAKGEIPEVAFMK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacagcgaacacgatgatgagcgtgttaatttccctcaa
agaaagaagaaaggccggggtcccttccggtggaaatatggtgaaggaaaccgtaggtct
ggaagaggcggttctggtattcggtcttcccgccttgaggaagatgatggagatgtggca
atgagtgacgcccaggatggtccccgagtacgatacaacccctataccacccgacctaac
cgtcggggtgatacttggcatgatcgagatcgcattcatgttactgtgcggagagacaga
gctcctccagagagaggaggggctggcaccagccaggatgggacctcaaagaactggttc
aagattacaattccttatggcagaaagtatgacaaggcatggctcctgagcatgattcag
agcaagtgcagtgtgcccttcacccctattgagtttcattatgagaatacacgggcccag
ttcttcgttgaagacgccagtactgcctctgcattgaaggctgtcaactataagattttg
gatcgggagaaccgaaggatatctatcatcatcaactcttctgctccaccccacacaata
ctgaatgaactgaagccagaacaagtagaacagctaaagctgatcatgagcaaacgatat
gatggctcccaacaagcccttgacctcaagggcctccgttcagacccagatttggtggcc
cagaacattgacgttgtcctgaatcgcagaagctgtatggcagctaccctgaggatcatt
gaagagaacattcctgagctattgtccttgaacttgagcaacaacaggctatacaggctg
gatgacatgtctagcatcgttcagaaggcgcccaacctgaagatcctaaacctttctgga
aatgaattgaagtctgagcgggaattggacaagataaaggggctgaagctagaagagctc
tggctcgacggaaactccctgtgtgacaccttccgagaccagtccacctacatcagcgcc
attcgcgaacgatttcccaagttattacgcctggatggccatgagctacccccaccaatt
gcctttgatgttgaagcccccacgacgttaccgccctgcaagggaagctattttggaaca
gaaaacttgaagagtctggtcttgcacttcctgcaacagtactatgcaatttacgactct
ggagaccggcaagggctcctggatgcctaccatgatggggcctgctgttccctgagcatt
cctttcattcctcagaaccctgcccgaagcagcttggcggagtatttcaaggatagcaga
aatgtgaagaagcttaaagaccctaccttgcggttccggctgctgaagcacacgcgtctc
aacgttgttgccttcctcaatgagttgcccaaaacccagcacgacgtcaattccttcgtg
gtagacataagcgcccagacaagcacactgctgtgtttttctgtcaatggagtcttcaag
gaagtggacggaaagtcccgggattctttgcgagccttcacccggacgttcattgctgtt
cctgctagcaattcagggctatgtattgtaaacgacgagctatttgtgcggaatgccagt
tctgaagagacccaaagagccttcgctatgcctgcacccacgccttcctccagcccggtg
cccaccctctctccagagcagcaggaaatgttgcaagcattctctacccagtctggcatg
aacctcgagtggtcccagaagtgccttcaggacaacaactgggactacaccagatctgcc
caggccttcactcatctcaaggccaagggcgagatcccagaagtggcattcatgaagtga
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integrated database retrieval system
