Symphalangus syndactylus (siamang): 129488519
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Entry
129488519 CDS
T10134
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04151
PI3K-Akt signaling pathway
ssyn04382
Cornified envelope formation
ssyn04510
Focal adhesion
ssyn04512
ECM-receptor interaction
ssyn04820
Cytoskeleton in muscle cells
ssyn04926
Relaxin signaling pathway
ssyn04933
AGE-RAGE signaling pathway in diabetic complications
ssyn04974
Protein digestion and absorption
ssyn05146
Amoebiasis
ssyn05165
Human papillomavirus infection
ssyn05200
Pathways in cancer
ssyn05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
129488519 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129488519 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129488519 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129488519 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
129488519 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
129488519 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
129488519 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
129488519 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
129488519 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
129488519 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
129488519 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
129488519 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssyn04147
]
129488519 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ssyn00536
]
129488519 (COL4A4)
Exosome [BR:
ssyn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129488519 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ssyn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129488519 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129488519
NCBI-ProteinID:
XP_055146785
LinkDB
All DBs
Position
8:complement(131653819..131976814)
Genome browser
AA seq
1690 aa
AA seq
DB search
MWSLHIELMRCSFRLTKSLATGPWSLILILFSVQYVYGSGKKYVGPCGGRDCSVCHCVPE
KGSRGPPGPPGTQGPIGPPGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFPGL
DGIPGHPGPPGPRGKPGMSGHNGSRGDPGFLGGRGALGPGGPPGHPGEKGEKGNSVFILG
AIKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKG
QMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGTIGLPGPPGRKGESGTGAKGE
KGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGRPGPPGVLVT
PPLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPG
EAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVTYCSVGNPGPQGIKGKVGPPGGR
GSKGEKGNEGLCACEPGPMGPPGPPGLPGRQGNKGDLGLPGWLGTKGDPGPPGAEGPPGL
PGKHGASGPPGNKGAKGDTVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGA
PGDHEDATPGGKGFPGPLGPPGKAGPVGPPGRGFPGPPGERGHPGVPGRPGVRGPDGLKG
QKGDTISCNVTYPGRQGPPGFDGLPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTSEIPGP
PGFRGDMGDPGFGGERGSSPVGPPGPPGSPGVNGQKGIPGDPAFGPLGPPGKRGLSGVPG
IKGPRGDPGCPGAEGPAGIPGFPGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPG
LPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGWPGAHGPPGLPGIPGPFGDDGLPG
PPGPKGPRGPPGFPGFPGERGKPGADGCPGTKGEPGEKGMSGLPGDRGLRGAKGATGPPG
DEGEMAIISIKGKPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEK
GQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGTPGFSGIDGARGPKGNKGDPASH
FGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGLPGSSGPRGCPGDHGMPGL
RGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPP
GPVGIPGLKGERGDPGSPGISPPGPCGEKGPPGSPGRSGPPGPAGATGRAPKDIPDPGPP
GDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGK
DGQKGPMGFPGPQGPHGFPGPPGEKGLPGPPGRKGATGLPGPRGEPGPPADVDDCPRIPG
LPGAPGMRGPEGATGPPGMRGPPGPGCKGEPGLDGRRGVDGVPGSPGPPGHKGDTGEDGY
PGGPGPPGPIGDPGPKGFGPGYLSGFLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQE
KAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLASAAPLPMMPLSEEAIR
PYVSRCVVCEAPAQAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTGAGDQGGGQALMSPG
SCLEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVKADLQFSSAPAPDTLKESQAQRQKI
SRCQVCMKYS
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgtggtctctgcacatagaactaatgaggtgctccttcagattgaccaagtccttggcc
acaggtccctggtcacttatacttattctcttttctgtacaatatgtatatgggagtgga
aagaaatacgttggtccttgcggaggaagagattgctctgtttgccactgtgttcctgaa
aaagggtctcggggtccaccaggaccaccagggacacagggtcccattggacccccggga
gccccaggacccattgggctttcaggagagaaaggaatgagaggggaccgcggccctcct
ggagcagcaggggacaaaggagataagggtccaactggtgttcctggatttccaggttta
gatggcatacctgggcacccagggcctcctggacccagaggcaaacctggtatgagtggc
cacaatggctcaagaggtgacccagggtttctaggaggaagaggagctcttggcccagga
ggccccccaggccatcctggggaaaagggagaaaaaggaaattcagtgttcattttaggt
gccattaaaggtattcagggagacagaggggacccaggactgcctggcttaccaggatct
tggggtgcaggaggaccggcgggccccacaggatatcccggagagccagggttagtggga
cctccgggccaaccagggcgtccaggtttgaagggaaatcccggtgtaggagtaaagggg
caaatgggagacccgggtgaggttggtcagcaaggttctcctggacccaccctgttggta
gagccacctgacttttgtctctacaaaggagaaaagggtataaaaggaattcctggaacg
attggactgccaggaccaccaggacgcaagggagaatctggtactggggcaaaaggagaa
aaaggtattcctggatttccagggcctcggggggatcctggctcctatggatctccaggt
tttccaggattaaagggagaactaggactggttggagatcctgggctatttggattaatt
ggcccaaagggggatcctggaaatcgagggcgcccaggaccaccaggtgttttggtgact
ccacctcttccactcaaaggcccaccaggggacccagggttccctggccgctatggagaa
acaggggatgttggaccacctggtcccccaggtctcttgggcagaccgggggaagcctgt
gcaggcatgataggaccccctgggccacaaggatttcctggtcttcctgggcttccagga
gaagctggtattcctgggagacctgattctgctccaggaaaaccagggaagccaggatca
cctggcttgcctggagcaccaggcctgcagggcctcccaggatcaagtgtgacatactgt
agtgttgggaaccctggaccacaaggaataaaaggcaaagtgggtcccccaggaggaaga
ggctcaaaaggagaaaaaggaaatgaaggactctgtgcctgtgagcccggtcccatgggc
ccccctggccctccaggacttcctgggaggcaggggaataagggagacttggggctccct
ggctggcttggaacaaaaggtgacccaggacctcctggtgctgaaggacctccagggcta
ccaggaaagcatggtgcctccggaccacctggcaacaaaggggcgaagggtgacacggtt
gtatcaagagttaaagggcacaaaggagaaagaggtcctgatgggcccccaggatttcca
gggcagccaggatcacatggtcgggatggacatgctggagaaaaaggggatccaggagcc
ccaggggatcatgaagatgcgaccccaggtggtaaaggatttcctggacctctgggcccc
ccgggcaaagcaggacctgtgggacccccaggacggggatttcctggtccaccaggagag
cgaggccacccaggagttccaggccgcccaggtgtgaggggccctgatggcttgaagggt
cagaaaggtgacacaatttcttgcaacgtaacctaccctgggaggcaaggccctccaggt
tttgatggacttccaggtccgaagggatttccaggtccccaaggtgcccctgggctgagt
ggttcagatgggcataaaggcagacctggcacaccaggaacgtcggaaataccaggtcca
cctggttttcgtggtgacatgggagatccgggttttggaggtgaaagggggtcctcccct
gttgggcccccaggccctcctgggtcaccaggagtgaatggtcagaaaggaatcccggga
gaccctgcatttggtcccctgggacccccgggaaagaggggtctttcaggagtgccaggg
ataaaaggacccagaggtgatccgggatgtccaggggctgaagggccagctggcattcct
ggattcccaggtctcaaaggtcctaaaggcagagagggacatgctgggtttccaggtgtc
ccaggtccacctggccattcctgtgaaagaggtgctccagggataccagggcaaccggga
ctccctgggtatccaggtagcccaggtgctccaggtgggaaaggacagccgggagatgtg
gggcctcccgggccagctggaatgaaaggtctccccggactcccaggatggccgggggca
catggtcccccaggcctcccaggaatcccaggtccttttggggatgatgggctacctggt
cctccaggtccaaagggaccccgggggccgcctggtttcccaggttttcccggagaaaga
ggaaagcctggtgcagatggatgtcctggcacaaagggagaacccggagagaagggcatg
tctggccttcccggagaccggggactgagaggggccaaaggagccacaggacctcccgga
gatgaaggagaaatggctatcatttccataaagggaaaacctggggaacctggacctcct
ggagatgatggattcccaggagaaaggggtgataaaggaactcccgggatgcaagggaga
agaggagagcccggaagatacggaccacctggatttcacagaggggaacctggtgagaaa
ggtcagccagggcctcctggacccccaggccctccaggctcaactggtctaagagggttc
attggttttccaggacttccaggtgaccagggtgagccaggttctccaggtacccctgga
ttttcaggaattgatggagcaagaggacctaaaggaaacaaaggtgaccctgccagtcac
tttggtccacctggtccaaagggtgaaccaggtagccctggatgcccagggcattttgga
gcatccggagagcagggcttgcctggcattcaagggcccagaggatcacctggaaggcca
gggctacctggctcctctggaccacgagggtgcccaggtgatcacgggatgcctgggctg
aggggacagccaggagaaatgggagaccctgggccaagaggcctccagggggatccgggg
ataccaggtcctccgggaataaaaggtccctccggatcacctggcctgaacggcttgcat
ggattgaagggtcagaaaggaaccaaaggcgcttcaggtttgcatgatgtggggccacct
ggtccagtgggaatacctgggctaaaaggagagagaggagaccctgggagcccaggaatc
tctcctccaggtccttgtggagaaaaaggtcccccaggttccccagggagatcaggacca
cctggtcctgcaggtgctacaggaagagctcctaaggacattcctgacccgggtccacct
ggagatcagggacctcctggtcctgatggcccaagaggagcacctgggcctccaggcctc
cctgggagtgttgaccttctgagaggagagccaggtgactgtggtctaccagggccacca
ggtccccctggcccaccaggccctccaggatacaaaggctttccaggatgtgatggaaaa
gatggccagaaaggaccaatgggattcccggggccgcagggaccacatggatttcctggg
ccacctggagagaagggtttacctggacctccagggagaaaaggggccactggtcttcca
ggccccagaggtgaaccggggccacctgcagatgttgatgactgtccccgaatcccaggg
cttcctggggcgccaggcatgagaggaccagaaggagccacggggccccctggaatgaga
ggccccccaggaccagggtgcaaaggagagcctgggctggatggcaggaggggtgtggat
ggcgtccctgggtctcctgggcctcccggacataaaggtgacacaggagaagacggctac
cctggaggaccagggcctcctggtcccattggggatcctgggcccaaagggtttggccct
ggatacctcagtggcttcctcctggttctccacagtcagacggaccaggagcccacctgc
cccctgggcatgcccaggctctggactgggtatagtctgttatacctggaagggcaagag
aaagctcacaatcaagaccttggtctggcagggtcttgccttcccgtgtttagcacgctg
ccctttgcctactgcaacatccaccaggtgtgccactatgcccagagaaacgacagatcc
tactggctggccagcgctgcgcccctccccatgatgccactctctgaagaggcgatccgc
ccctatgtcagccgctgtgtggtatgcgaggccccggcccaggcggtggcggtgcacagc
caggaccagtccatccccccatgtccacagacctggaggagcctctggatcgggtattca
ttcctgatgcacacaggagctggggaccaaggaggagggcaggcccttatgtcacctggc
agctgcctggaagatttcagagcagcaccattccttgaatgccaaggccggcagggaact
tgccacttttttgcaaatgagtatagcttctggctcacaacggtgaaagcagacttgcag
ttttcctctgctccagcaccagacaccttaaaagaaagccaggcccaacgccagaaaatc
agccggtgccaggtctgcatgaagtatagctag
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integrated database retrieval system
