Symphalangus syndactylus (siamang): 129488520
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Entry
129488520 CDS
T10134
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04151
PI3K-Akt signaling pathway
ssyn04382
Cornified envelope formation
ssyn04510
Focal adhesion
ssyn04512
ECM-receptor interaction
ssyn04820
Cytoskeleton in muscle cells
ssyn04926
Relaxin signaling pathway
ssyn04933
AGE-RAGE signaling pathway in diabetic complications
ssyn04974
Protein digestion and absorption
ssyn05146
Amoebiasis
ssyn05165
Human papillomavirus infection
ssyn05200
Pathways in cancer
ssyn05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
129488520 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129488520 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129488520 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129488520 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
129488520 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
129488520 (COL4A3)
09158 Development and regeneration
04382 Cornified envelope formation
129488520 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
129488520 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
129488520 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
129488520 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
129488520 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
129488520 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssyn04147
]
129488520 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
ssyn00536
]
129488520 (COL4A3)
Exosome [BR:
ssyn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129488520 (COL4A3)
Glycosaminoglycan binding proteins [BR:
ssyn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129488520 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129488520
NCBI-ProteinID:
XP_055146786
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All DBs
Position
8:131823584..131976758
Genome browser
AA seq
1670 aa
AA seq
DB search
MSPRTAPRPQVFLLQLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSP
GQKGFTGPEGLPGPQGPKGSPGLPGLMGSKGARGITGLPGFSGSPGLPGTPGNTGPYGLV
GVPGCNGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAKGEDIELDAKGDPGLPGAPG
PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGRKGERGVKGLTGPPGP
PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGPQGKPG
KDGVPGFPGNEGVKGNRGFPGLTGEDGIKGQKGDIGSPGFRGPIEYYDTYQEKGDEGIPG
PPGPKGTRGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGTKGERGHPGKDALGTPGSP
GCPGSPGLPGSPGPPGPPGDIVFRKGPPGDRGLPGYLGSPGIPGVDGPKGEPGLLCTRCP
YIPGPPGLPGLPGLYGVKGIPGRQGAAGLKGSPGSPGNAGLPGFPGFPGAQGDPGLKGEK
GETHQPEGQVGAPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGD
PGSPGSPGPAGPAGPPGYGPQGEPGPQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGP
PGPPGHPGLQGPPGIPGSMGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSL
GCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPG
TPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGD
PGIPGLDRSGFPGETGSPGMPGHQGEMGPPGQKGYPGNPGILGPPGEDGVVGMMGFPGAI
GPLGPPGNPGTPGHRGSPGIPGVKGRRGTPGAKGEQGDKGNPGPSQISHVIGDKGEPGLK
GFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSIGNPGEPGLRGIPGSMGNM
GMPGSKGKRGTLGFPGRGGRPGLPGIHGLQGDKGEPGYSEGTRPGRPGPTGDPGLPGDMG
KKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGNPGPHGDLGFKGIKGFLGPPGIKGPPG
LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFP
GLPGRKGAKGDAGPQGPTGIEGFPGPPGLPGAIIPGQKGNHGPRGSRGSPGEPGAPGPPG
SHVIGIKGDKGSMGHPGPQGPPGTIGDMGPPGHLGAPGTPGLPGLRGDPGFHGFPGVKGE
KGNPGFLGSTGPPGPIGPKGPPGVCGDPGTLQIISLPGSPGPPGTPGEPGMQGEPGPPGP
PGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPPGSDGLPGLKGKRGDSGSPAT
WTTRGFVFTRHSQTTAIPSCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTM
PFLFCNVNDVCNFASRNDYSYWLSTPALMPMNMAPITGRAIEPYISRCTVCEGPAIAIAV
HSQTTDIPPCPHGWISLWKGFSFIMFTSAGSEGTGQALASPGSCLEEFRASPFLECHGRG
TCNYYSNSYSFWLASLNPERMFRKPIPSTVKAGELEKIISRCQVCMKKRH
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgagcccccggacggcccccaggccgcaggtgttcctgctgcagctcctgctggtgctc
ctggcggcggcgcccgcagccagcaagggctgtgtctgtaaagacaaaggccagtgcttc
tgtgacggggccaaaggggagaagggggagaaaggctttcctggaccccccggttctcct
ggccagaaaggattcacgggtcctgaaggcttgcctggaccgcagggacccaagggctct
ccaggacttccgggactcatgggttccaaaggtgcaaggggaataactggattgccagga
ttttccggttctcctggacttccaggcaccccaggcaatactgggccttatggacttgtc
ggtgtaccaggatgcaatggttctaagggtgagcaggggtttccaggactcccagggaca
ctgggctacccagggatcccgggtgctgctggtttgaaaggacaaaagggtgctcctgct
aaaggagaagatatagaacttgatgcaaaaggcgaccccgggttgccaggggctccagga
ccccagggtttgccaggccctccaggtttccctggacccgttggcccacctggtcccccg
ggattctttggctttccaggagccatgggacctagaggacctaagggtcacatgggtgaa
agagtgataggacgaaaaggagagcggggtgtgaaagggttaacaggacccccgggacca
ccaggaacagttattgtgaccctaactggcccagataacagaacggacctcaagggggaa
aagggagacaagggagcaatgggtgagcctggacctcctggaccctcaggactgcctgga
gaatcatatggatctgaaaagggtgctcctggagaccctggcccgcagggaaaacccgga
aaagacggtgttcctggcttccctggaaatgagggagtcaagggtaacaggggtttcccc
ggattaacgggtgaagatggcattaagggacagaagggggacattggctctccaggattt
cgtggtccaatagaatattatgacacataccaggaaaagggagatgaaggcattccaggc
ccaccagggcccaaaggaactcgtggcccacaaggtcccagtggtccccccggagttcct
ggaagtcctggatcatcaaggcctggcctcagaggagcccctggatggccaggcttgaaa
ggaactaaaggggaacgaggccacccaggaaaggatgccctggggactcctgggtcccca
ggttgtcctggttcaccaggccttccaggatcaccgggacctccaggaccaccaggtgac
atcgtttttcgcaagggtccacctggagatcgcggactgccaggctatctagggtctcca
ggaatcccaggagttgatgggcccaaaggagaaccaggcctcctgtgtacacggtgccct
tatatcccagggcctcccggtctcccaggattgccagggttatatggtgtaaaaggaatc
ccaggaagacaaggtgcagctggcttgaaaggaagcccagggtccccaggaaatgcaggt
cttccaggatttccaggtttcccaggtgcccagggtgacccaggacttaaaggagaaaaa
ggtgaaacacatcagcctgaggggcaagtgggtgccccaggggacccggggctcagaggc
caacctgggagaaagggcttggatggaattcctggaactccgggagtgaaaggattacca
ggacctaaaggcgaactggctctgagtggtgagaagggggaccaaggtcctccaggggat
cctggctcccctgggtccccaggacctgcaggaccagctggaccacctggctacggaccc
caaggagaacctggtcctcagggcacgcaaggagttcctggagcccctggaccacccgga
gaagccggccctaggggagaactcagtgtttcaacaccagttccaggcccaccaggacct
ccagggccccctggccatcctggcctccaaggtccacctggtatccctggatccatgggg
aaatgtggagatcctggtcttccagggcctgatggtgaaccaggaattccaggaattgga
tttcctgggcctcctggacctaagggagaccaaggttttccaggtacaaaaggatcacta
ggttgtcctggaaaaatgggagagcctgggttacctggaaagccaggcctcccaggagcc
aagggagaaccagcagtagccatgcctggaggaccaggaacaccaggttttccaggagaa
agaggcaattctggggaacatggagaaattggactccctggacttccaggtctccctgga
actccaggaaatgaagggcttgatggaccacgaggagatccagggcagcctggaccacct
ggagaacaaggacccccaggaaggtgcatagagggtcccaggggagcccaaggacttcca
ggcttaaatggattgaaagggcaacaaggcagaagaggtaaaacggggccaaagggagac
ccaggaattccaggcttggatagatcaggatttcctggagaaactggatcaccaggaatg
ccaggtcatcaaggcgagatgggaccaccgggtcaaaaaggatatccaggaaatccggga
attttagggccaccaggtgaagatggagtggttgggatgatgggctttcctggagccatt
ggccctctggggccccctgggaacccaggcacgccagggcacagggggagccctggaatt
ccaggagtaaagggccggagaggaaccccaggagccaagggagaacaaggggataaagga
aatcccgggccttctcagatatcccacgtaataggggacaaaggagaaccaggtctcaaa
ggattcgcaggaaatccaggtgagaaaggaaacagaggtgttccagggatgccaggttta
aaaggcctcaaaggactacctggaccagcaggaccaccaggccccagaggagatttgggc
agcattgggaatcctggagaaccaggactacgtggtataccaggaagcatggggaacatg
ggcatgccaggttctaaaggaaaaaggggaactttgggattcccaggtcgaggaggaaga
ccaggcctcccaggtattcacggtctccagggagataagggagagccaggttattcagaa
ggtacaaggccaggacgaccgggaccaacgggggatccaggactaccgggtgatatggga
aagaaaggagaaatggggcaacctggcccacctggacatttggggcctgctggacctgag
ggagcccctggaagtcctggaagtcctggcctcccaggaaatccaggtcctcatggtgat
ttgggttttaaaggaatcaaaggcttcctgggccctccaggaatcaaaggccctccaggt
cttccaggattcccaggatctcctggaccaatgggtataagaggtgaccaaggacgtgat
ggaattcctggtccagccggagaaaagggagaaacgggtttattgagggcccctccaggc
ccaagagggaaccctggtgctcaaggagctaaaggagacaggggagccccaggttttcct
ggcctcccgggcagaaaaggggccaagggagatgctgggcctcaagggcccacaggcata
gaaggattcccagggccaccaggtctgcccggtgcaattatccccggccagaaaggaaat
cacggtccacgaggctcaagaggaagcccaggtgagcctggtgcccctggacctccaggg
agtcatgtaataggcataaaaggagacaaagggtctatgggccaccctggcccgcaaggt
ccacctggaactataggagacatgggaccaccaggtcatctgggagcaccaggtactcca
ggtcttccaggactcagaggtgatcctggattccacgggtttccaggcgtgaaaggagaa
aagggtaatcctggatttctaggatccactggacctccaggaccaattgggccaaaagga
ccacctggtgtatgtggagaccctggcacacttcagattatctcccttccaggaagccca
gggccacctggcacacctggagaaccagggatgcagggagaacctgggccaccagggcca
cctggaaacctaggaccctgtgggccaagaggtaagccaggcaaggatggaaaaccagga
actcctggaccagctggagaaaaaggcaacaaaggttctaaaggagagccaggaccacct
ggatcagatggattgccaggtttgaaaggaaaacgtggagacagtggatcacctgcaacc
tggacaacgagaggctttgtcttcacccgacacagtcaaaccacagcaattccttcatgt
ccagaggggacagtgccactctacagtggcttttcttttctttttgtacaaggaaatcaa
cgagcccacggacaagaccttggaactcttggcagctgcctgcagcgatttaccacaatg
ccattcttattctgcaatgtcaatgatgtatgtaatttcgcatctcgaaatgattattca
tactggctgtcaacaccagctctgatgccaatgaacatggctcccattactggcagggcc
attgagccttatataagcagatgcactgtttgtgagggtcctgcgatcgccatagccgtt
cacagccaaaccactgacattcctccatgtcctcatggctggatttctctctggaaagga
ttttcattcatcatgttcacaagtgcaggttctgagggcaccgggcaagcactggcctcc
cctggctcctgcctggaagaattccgagccagcccatttctagaatgtcatggaagagga
acgtgcaactactattcaaattcctacagtttctggctggcttcattaaacccagaaaga
atgttcagaaagcctattccatcaactgtgaaagctggggaattagaaaaaataataagt
cgctgtcaggtgtgcatgaagaaaagacactga
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integrated database retrieval system
