Symphalangus syndactylus (siamang): 129488606
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Entry
129488606 CDS
T10134
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04136
Autophagy - other
ssyn04140
Autophagy - animal
ssyn04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
129488606 (ATG16L1)
04136 Autophagy - other
129488606 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129488606 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssyn04131
]
129488606 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ssyn03029
]
129488606 (ATG16L1)
Membrane trafficking [BR:
ssyn04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
129488606 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
129488606 (ATG16L1)
Mitochondrial biogenesis [BR:
ssyn03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
129488606 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_IFT140_1st
eIF2A
NBCH_WD40
Beta-prop_HPS5
Beta-prop_ACSF4
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_NWD2_C
TolB_like
Motif
Other DBs
NCBI-GeneID:
129488606
NCBI-ProteinID:
XP_055147009
LinkDB
All DBs
Position
8:137898810..137941751
Genome browser
AA seq
624 aa
AA seq
DB search
MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HDVPNRHEISPGHDGTWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQRK
DREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDALQITFTALEGKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSSDAA
RRRSVSSFPVPQDNVDTHAGSGKEVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVK
QTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAV
AWSPAGSHVVSVDKGCKAVLWAQY
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgccgctgacttcccccgctggaagcgccacatctcggagcaa
ctgaggcgccgggaccggctgcagagacaggcgttcgaagagatcatcttgcagtataac
aaattgctggaaaagtcagatcttcattcagtattggcccagaaactacaggctgaaaag
catgacgtaccaaacaggcatgagataagtcccggacatgatggcacatggaatgacagt
cagctacaagaaatggcccaactgaggattaagcaccaagaagaactgactgaattacac
aagaaacgtggggagttagctcaattggtgattgacctgaataaccaaatgcagcggaag
gacagggagatgcagatgaatgaagcaaaaattgcagaatgtttgcagactatctctgac
ctggagacggagtgcctagacctgcgcactaagctttgtgaccttgaaagagccaaccag
accctgaaggatgaatatgatgccctgcagatcacctttactgccttggagggaaaactg
aggaaaactacggaagagaaccaggagctggtcaccagatggatggctgagaaagcccag
gaagccaatcggcttaacgcagagaatgaaaaagactccaggaggcggcaagcccggctg
cagaaagaacttgcagaagcagcaaaggaacctctaccagtcgaacaggatgatgacatt
gaggtcattgtggatgaaacctctgatcacacagaagagacctctcctgtgcgagccatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttgggacatcattcttcttctgatgctgcc
aggagacgctctgtctcttccttcccagtcccccaggacaatgtggatactcatgctggt
tctggtaaagaagtgagggtaccaactactgccttgtgtgtcttcgatgcacatgatggg
gaggtcaacgctgtgcagttcagtccaggttcccggttactggccaccggaggcatggac
cgcagggtgaagctttgggaagtatttggagaaaaatgtgagttcaagggttccctatct
ggcagtaatgcaggaattacaagcattgaatttgatagcgctggatcttacctcttagca
gcttcaaatgattttgcaagccgaatctggactgtggatgattatcggttacggcacaca
ctcacgggacacagtgggaaagtgctgtctgctaagttcctgctggacaatgcgcggatt
gtctcaggaagtcatgaccggactctcaaactctgggatctacgcagcaaagtctgcata
aagacagtgtttgcaggatccagttgcaatgatattgtctgcacagagcaatgtgtaatg
agtggacattttgacaagaaaattcgtttctgggacattcgatcagagagcatagttcga
gagatggagctgttgggaaagattactgccctggacttaaacccagaaaggactgagctc
ctgagctgctcccgggatgacttgctaaaagttatcgatctccgaacaaatgctgtcaag
cagacattcagtgcacctgggttcaagtgcggctctgactggaccagagttgtcttcagc
cctgatggcagttacgtggcggcaggctctgctgagggctctctctatgtctggagtgtg
ctcacagggaaagtggaaaaggttctttcaaagcagcacagctcatccatcaatgcggtg
gcgtggtcgcccgctggctcgcacgttgttagtgtggacaaaggatgcaaagctgtgctg
tgggcacagtattga
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