Symphalangus syndactylus (siamang): 129490210
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Entry
129490210 CDS
T10134
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04137
Mitophagy - animal
ssyn04141
Protein processing in endoplasmic reticulum
ssyn05014
Amyotrophic lateral sclerosis
ssyn05022
Pathways of neurodegeneration - multiple diseases
ssyn05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129490210 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
129490210 (VCP)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
129490210 (VCP)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
129490210 (VCP)
05022 Pathways of neurodegeneration - multiple diseases
129490210 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129490210 (VCP)
03009 Ribosome biogenesis [BR:
ssyn03009
]
129490210 (VCP)
04131 Membrane trafficking [BR:
ssyn04131
]
129490210 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssyn04147
]
129490210 (VCP)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
129490210 (VCP)
Ribosome biogenesis [BR:
ssyn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129490210 (VCP)
Membrane trafficking [BR:
ssyn04131
]
SNARE
SNARE associated proteins
Others
129490210 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129490210 (VCP)
Exosome [BR:
ssyn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129490210 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
129490210
NCBI-ProteinID:
XP_055149817
LinkDB
All DBs
Position
9:109770520..109786674
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGSVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggagccgattcaaaaggtgatgacctatcaacagccattctcaaacagaag
aaccgtcccaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtgtcc
ttgtcacagcccaagatggatgaattgcagttgttccgaggtgacacagtgttgctgaaa
ggaaagaagagacgagaagctgtttgcatcgtcctttctgatgatacttgttctgatgag
aagattcggatgaatagagttgttcggaataaccttcgtgtacggctaggggatgtcatc
agcatccagccatgccctgatgtgaagtacggcaaacgtatccacgtgctgcccattgat
gacacggtggaaggcattactggtaatctctttgaggtataccttaagccgtacttcctg
gaagcttatcgacccatccggaaaggagacatttttcttgtccgtggtgggatgcgtgct
gtggagttcaaagtggtggaaacagatcctagcccttattgcattgttgctccagacaca
gtaatccactgcgaaggggagcctatcaaacgagaggatgaggaagagtccttgaatgaa
gtagggtatgatgacattggtggctgcaggaagcagctagctcagataaaggagatggtg
gaactgcccctgagacatcctgccctctttaaggcaattggtgtgaagcctcccagagga
atcctgctttatggacctcctggaacaggaaagaccctgattgctcgagctgtagcaaat
gagactggagccttcttcttcttgatcaatggtcctgagatcatgagcaaattggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaggctgagaagaatgctcctgctatc
atcttcattgatgagctggatgccatcgctcccaaaagagagaaaactcatggtgaggtg
gagcggcgcattgtatcacagttgttgaccctcatggatggcctaaagcagagagcacat
gtgattgtcatggcagcaaccaacagacccaatagtattgacccagctctacggcgattt
ggtcgctttgacagggaggtagatattggaattcctgatgctacaggacgcttagagatt
cttcagatccataccaagaacatgaagctggcagatgatgtggacctggaacaggtagcc
aatgagactcacgggcatgtgggtgctgacttagcagccttgtgctcagaggctgctctg
caagccatccgcaagaagatggatctcattgacctagaggatgagaccatagatgccgag
gtcatgaactctctagcagttactatggatgacttccggtgggccttgagccagagtaac
ccatcagcactgcgggaaaccgtggtagaggtgccacaggtaacctgggaagacatcggg
ggcctagaggatgtcaaacgtgagcttcaggagctggtccagtatcctgtggagcaccca
gacaaattcctgaagtttggcatgacaccctccaagggagttctgttctatggacctcct
ggctgtgggaaaactttgttggccaaagccattgctaatgaatgccaggccaacttcatc
tccatcaagggtcctgagcttctcaccatgtggtttggggagtctgaggccaatgtcaga
gaaatctttgacaaggcccgccaagctgccccctgtgtgctattctttgatgagctggat
tcgattgctaaggctcgtggaggtaacattggagatggtggtggggctgctgaccgagtc
atcaaccagatcctgacagaaatggatggcatgtccacaaaaaaaaatgtgtttatcatt
ggcgctaccaaccgtcctgacatcattgatcctgccatcctcagacctggccgtcttgat
cagctcatctacatcccacttcctgatgagaagtcccgtgttgccatcctcaaggctaac
ctgcgcaagtccccagttgccaaggatgtggacttggagttcctggctaaaatgactaat
ggcttctctggagctgacctgacagagatttgccagcgtgcttgcaagctggccatccgt
gaatccatcgagagtgagattaggcgagaacgagagaggcagacaaacccatcagccatg
gaggtagaagaggatgatccagtgcctgagatccgtcgagatcactttgaagaagccatg
cgctttgcacgccgttctgtcagtgacaatgacattcggaagtatgagatgttcgcccag
acccttcagcagagtcggggctttggcagcttcagattcccttcagggaaccagggtgga
gctggccccagtcagggcagtggaggcggcacaggtggcagtgtatacacagaagacaat
gatgatgacctgtatggctaa
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