Symphalangus syndactylus (siamang): 129491878
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Entry
129491878 CDS
T10134
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03013
Nucleocytoplasmic transport
ssyn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129491878 (UPF2)
03015 mRNA surveillance pathway
129491878 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129491878 (UPF2)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129491878 (UPF2)
mRNA cycle factors
P-body specific factors
129491878 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
129491878
NCBI-ProteinID:
XP_055152483
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All DBs
Position
10:complement(17342401..17464602)
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AA seq
1272 aa
AA seq
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MPAERKKPASMEEKDSLPNNKEKDCSERRPVSSKERPKDDIKLTAKKEVSKAPEDKKKRL
EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ
MKEKEESIQLHQEAWERHHLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKT
ITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSL
LQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRE
SHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYF
TSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPA
ILFKDNEKSCQNKESNKDDTKEAKESKDNKEVSSPDDLELELENLEINDDTLELEGGDEA
EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
ETKNKTVRFIGELTKFKMFTKSDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESVRQVQDLEREFLIKLGLVNDKDSK
DSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLT
DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
ADLIFKTGGRRR
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagactctttaccaaataac
aaggaaaaagactgcagtgaaaggcggccagtgagcagcaaggagaggccaaaagacgat
atcaagctcactgccaagaaggaggtcagcaaggcccctgaagacaagaagaagagactg
gaagatgataagagaaaaaaggaagacaaggaacgcaagaaaaaagacgaagaaaaggtg
aaggcagaggaagaatcaaagaaaaaagaagaggaagaaaaaaagaaacatcaagaggaa
gagagaaagaagcaagaagagcaggccaaacgtcagcaagaagaagaagcagctgctcag
atgaaagaaaaagaagaatccattcagcttcatcaggaagcttgggaacgacatcattta
agaaaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaacttc
tttagccgccttgactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaact
attacggaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaaa
tacattgccgaagctgtagcttctatcgtggaagcaaaactaaaaatctctgatgtgaac
tgtgctgtgcacctctgctctctctttcaccagcgttatgctgactttgccccatcactt
cttcaggtctggaaaaaacattttgaagcaaggaaagaggagaaaacacctaacattacc
aagttaagaactgatttgcgttttattgcagaattgacaatagttgggattttcactgac
aaggaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgggag
tcccacactcatgtctctgtagtgattagtttctgtcgacattgtggagatgatattgct
ggacttgtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcct
agtgagataattagtccagagaaacaacagcccttccagaatcttttaaaagagtacttt
acgtctttgaccaaacacctgaaaagggaccacagggagctccagaatactgagagacaa
aacaggcgcattctacattctaaaggggagctcagtgaagatagacataaacagtatgaa
gaatttgctatgtcttaccagaagctgctggcaaattctcaatccttagcagaccttttg
gatgaaaatatgccagatcttcctcaagacaaaccaacaccagaagaacatgggcctgga
attgatatattcacacctggtaaacctggagaatatgacttggaaggtggtatatgggaa
gatgaagatgctcggaatttttatgagaacctcattgatttgaaggcttttgtcccagcc
atcttgtttaaagacaatgaaaaaagttgtcagaataaagagtccaacaaagatgatacc
aaagaagcaaaagaatctaaggataataaggaggtatcgagtcccgatgatttggagctt
gagttggagaatctagaaattaatgatgacaccttagaattagagggtggagatgaagct
gaagatcttacaaagaaacttcttgatgaacaagaacaagaagatgaggaagccagcact
ggatctcatctcaagctcatagtagatgctttcctacagcagttgcccaactgtgtcaac
cgagatctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaac
aggaagaagttggtacgggcactcttcatagttcccagacaaaggttggatttgctacca
ttttatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctt
tgttccatgctgaggggggatttcagatttcatgtacggaaaaaagaccagatcaatatt
gaaacaaagaataaaactgttcgttttataggagaactaactaagtttaagatgttcacc
aaaagtgacacactacattgtttaaagatgcttctgtcagacttctctcatcaccatatt
gaaatggcatgcaccctgctggagacatgtggacggtttcttttcagatctccagaatct
cacctgaggaccagtgtacttttggagcaaatgatgagaaagaagcaagcaatgcatctt
gatgcgagatatgtcacaatggtagagaatgcatattactactgcaacccgcctccagct
gaaaaaaccgtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtac
aaggatctctctaaggttaccactgagaaggttttgagacagatgcgaaagctgccctgg
caggaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaa
tataatagtattcattgtgtagccaacctcttagcaggactagtgctctaccaagaggat
gttgggatccacgttgtggatggagtgttagaagatattcgattaggaatggaggttaat
caacctaaatttaatcagaggcgcatcagcagtgccaagttcttaggagaactttacaat
taccgaatggtggaatcagctgttattttcagaactctgtattcttttacctcatttggt
gttaatcctgatggctctccaagttccctggacccacctgagcatcttttcagaattaga
ctcgtatgcactattctggacacatgtggccagtactttgacagaggttccagcaaacgg
aaacttgattgtttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggag
gtttggacaaaagaccatccatttcctattgatatagattacatgatcagtgacacacta
gaactgctaagaccaaagatcaaactctgtaattctctggaagaatccgtcaggcaggta
caagacttggaacgagaattcttaataaaactaggcctagtaaatgacaaagactcaaaa
gattctatgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggtggggct
gaaacagaagaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggt
tcagataatgatgatgatgagggagaagaagaggaggaagagaatacagattaccttaca
gattccaacaaggaaaatgaaaccgatgaagagaatactgaggtaatgattaaaggtggt
ggacttaagcatgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatg
atgctagaaaatctacagcaacgaagtggtgaatctgttaaagtgcaccaactagatgtt
gccattcctttgcatctcaaaagccagctgaggaaagggcccccactgggaggtggggaa
ggagaggccgagtctgcagacacaatgccgtttgtcatgttaacaagaaaaggcaataaa
cagcagtttaagatccttaacgtacccatgtcctctcaacttgctgcaaatcattggaac
cagcaacaggcagaacaagaagagaggatgagaatgaaaaagctcacactagatatcaat
gaacggcaagaacaagaagattatcaagaaatgttgcagtctcttgcacagcgcccagct
ccagcaaacaccaatcgtgagaggcggcctcgctaccaacatccgaagggagcacctaat
gcagatctaatctttaagactggtgggaggagacgttga
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