Symphalangus syndactylus (siamang): 129492918
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Entry
129492918 CDS
T10134
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ssyn Symphalangus syndactylus (siamang)
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssyn03041
]
129492918 (YTHDC2)
Enzymes [BR:
ssyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129492918 (YTHDC2)
Spliceosome [BR:
ssyn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129492918 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
Ank_2
AAA_19
AAA_22
HA2_N
nSTAND3
Ank
ATPase
PhoH
AAA_7
AAA_16
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
129492918
NCBI-ProteinID:
XP_055154371
LinkDB
All DBs
Position
11:100503746..100585196
Genome browser
AA seq
1430 aa
AA seq
DB search
MSRPSSLSPLQPAPGGGGGGGPSPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHTTLKLILSSAALDVNLFIRYF
GSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQQEEKQQTTLTEWYSAQEN
SLKPESQRQRTVLNVTDEYDFLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHK
DIDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHTCDAGAVLIFVPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFHLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCSIADFLMKAPEPPPALIVRNAVQMLKTVDAMDTWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFVSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPASVLSQPQYKKIPPA
NGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSF
RADGIPNDSSDSEMEDKTTANLAALKLDEWLHFKLQPEAASLLLQLRQKWHSLFLRRMRA
PSKPWSQVDEATIRAIIAVLSSEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
SSADTEFSDECTTAERVLMKSPSPALHPPQKYKDRGILHPKRGTEDRSDQSSVKSTDSSS
YPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKL
NRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLP
FQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKNTTD
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcctctccccgctgcagccggctcctggcggtggcggaggcggc
ggcccctcgccgtgtggccctgggggcggcggccgggccaaggggctgaaggacattcgc
attgatgaggaggtgaagatcgcagtcaatatcgcgctggagcgcttccgatacggggac
cagagagaaatggaatttccttcttctttgaccagtactgaaagagcctttattcatcga
ctcagtcagtctcttggtttggtctctaaaagtaaaggaaagggagcaaatagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagag
cgtacagaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacaatggcatacctcagattccagtgaaa
agaggagaatccgaatttgattcttttaggcagtctttaccagtgtttgagaaacaggaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagaccacacagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtactcaaccaagacgattggcagctattgctgtggctgaaagagtt
gccgcagagagaagggaaaggattggtcaaacaattggttatcagatccgattagaaagc
agggtttctccaaagacacttctgacattttgtactaatggggtattgcttcgtacattg
atggcgggagatagtacgttgtccactgtgacacatgttatcgtggatgaagtgcatgaa
agggatcgatttagtgattttttacttacaaagttaagagatttgttgcaaaagcacacc
actttgaaactaattctttctagtgctgccttggatgtaaatctctttataagatatttt
ggaagttgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagatattttaagaacaactggatatacaaacaaagaaatgttaaaatacaaaaaggaa
aaacagcaagaagagaaacaacaaaccacacttacagaatggtactcagctcaagaaaat
agtttgaagcctgaatctcagaggcagagaactgttctaaatgtgactgatgagtatgac
ttcctggatgatggtggtgatgctgtcttcagtcagctgactgaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctttctgatatatggctacataaa
gatattgatgcctttgctcaggtctttcatctcattttaactgaaaatgttagtgttgat
tacagacatagtgaaaccagtgcaacagctctgatggttgctgcaggacgtggctttgca
agtcaagtagaacagttaatcagtatgggagccaatgtccatagtaaagcatcaaatggc
tggatggcattggattgggctaaacactttgggcagactgaaattgtggatcttctagaa
tcttacagtgcttcactggaatttggaaatctggatgaaagttctctggttcaaacaaat
ggaaatgacctcagtgctgaagacagagagctcctgaaagcttatcatcatagtttcgat
gatgaaaaagtagacttggatttgatcatgcatcttctatacaatatctgccatacttgt
gatgctggtgcagtactaatttttgtgcctggatatgacgaaattgttggactgagagat
cgcatcctgtttgatgacaagcggtttgctgacaatacacataggtatcaagtctttatg
cttcattcaaatatgcaaacatccgatcaaaagaaagtattaaaaaacccacctgcaggt
gttcgaaaaataatcctttccactaatattgctgaaaccagcatcacagtcaatgatgtt
gtctttgttattgattctggtaaggtgaaagagaaatcctttgatgctctgaattttgtt
acaatgttaaaaatggtatggatttccaaagctagtgccatacagcggaaaggcagggca
ggacgatgtagacctggaatttgttttcatctgttcagtagactccgattccagaatatg
ttggaatttcagactcctgaacttttgagaatgccattacaggaactttgcttacatacc
aagctgctagccccagttaattgttccattgctgattttcttatgaaagctcctgaacct
ccaccagctttaattgtaagaaatgctgtacagatgcttaagacagtagatgcaatggat
acatgggaagatctgactgaacttgggtatcatttggctgacttgccagtagaaccacat
cttggtaaaatggtcttgtgtgctgttgttttaaagtgtctggaccccatccttacaatt
gcttgcacactagcttatcgagatccttttgtactacctactcaggcctctcaaaaacgt
gcagctatgctttgtaggaaacgttttactgcaggagctttcagtgaccatatggcactt
ctcagagcattccaggcctggcaaaaagcacgaagtgatgggtgggagcgagccttttgt
gaaaagaattttgtttcacaggctactatggaaataatcataggcatgagaacgcagttg
cttggtcaacttagagcatcaggttttgttagagcgcgaggtggtggtgacattcgagat
gttaacacaaactctgaaaattgggctgtcgttaaagctgcattggtggcaggcatgtat
cctaatttagtccacgtggacagagagaatctagtgttgacagggccaaaggagaaaaaa
gtacgatttcatcctgcttcagttctcagtcagcctcagtataaaaagattcctccagcc
aatggtcaagctgcagcaattaaggcactgcccacagattggcttatttatgatgaaatg
accagagcccatagaatagctaatattagatgttgttcagcagtgacgcctgtcactata
ttggtattctgtggaccagctagattggcaagtaatgctcttcaggaaccttcatccttt
agagcggatggcattcccaatgacagtagtgatagtgaaatggaggacaaaactacagct
aatttggcagccttgaaacttgatgagtggctccatttcaaactgcagccagaggcagct
agtttattgctgcagctcagacagaagtggcatagcttatttttacgccgaatgagagct
ccatctaaaccttggtctcaagttgatgaagctaccataagagcaattatagctgtttta
agcagtgaagaacagtctgcaggtttacaacaaccatctgggattggccaaaggccaagg
cctatgtcttcagaagagcttcctttggcctcatcttggaggtcaaataatagtaggaaa
agttcagcagatactgaattttctgatgagtgtactactgcagaaagagtactgatgaaa
tctccatctccagcattacatccaccccagaagtataaagatagaggaattttacaccct
aaacgaggcactgaggatcgatcagatcagtcttctgtgaaatctacagacagcagtagt
tacccaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctcct
tcaccaagaccaaacatgcctgttcgatacttcataatgaagagtagcaatttgagaaac
cttgaaatttctcaacagaagggtatctggtctacaactcctagtaatgaacggaagcta
aatcgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctgga
catttccaggggttttctaggatgtcttctgagattggaagggaaaagagccaggactgg
ggctctgctggactaggaggagtatttaaggtggagtggatacgaaaagaaagccttccc
tttcagtttgcacaccatttactcaatccatggaatgacaacaagaaagtgcagataagc
agggatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgt
cttcccttgggagaaaaaaacacaactgattga
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