Symphalangus syndactylus (siamang): 134734417
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Entry
134734417 CDS
T10134
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134734417 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
134734417 (SMG5)
03032 DNA replication proteins [BR:
ssyn03032
]
134734417 (SMG5)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134734417 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
134734417 (SMG5)
DNA replication proteins [BR:
ssyn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
134734417 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
SPAR
Motif
Other DBs
NCBI-GeneID:
134734417
NCBI-ProteinID:
XP_063482942
LinkDB
All DBs
Position
19:complement(84674791..84712929)
Genome browser
AA seq
1016 aa
AA seq
DB search
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVNTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQP
KSSSMDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPLEKEEEPDPEPPPIAPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSEGFES
DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLE
PPRGRSEAPDSLNGPLDTSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTDPHT
SASHRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELP
DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRSLLSTLEESVVRICCIRSFGHFIARLQ
GSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQG
AGEEDPSGMVTIITGLPLDNPSVLSSPMQAALQAAAHASVDIRNVLDFYKQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccacaggggagagcagcgagcccgaagcaaaagtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgacctcatcctttgcaac
aaaactgcttatcaagaagtattcaaaccagaaaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggagaaaggctgaggag
ctgctgtggagaaaggtatactatgaagttatccagcttatcaagactaacaaaaagcac
atccacagccggagcactttggaatgtgcctacaggacgcacctggttgctggtattggc
ttctaccagcatctccttctctatatccagtcccactaccagctggaactgcagtgctgc
atcgactggacccatgtcactgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggattgggcacagatggcatgtcaccgatgtctagtgtacctgggggat
ttgtcacgatatcagaatgaattagctggcgtaaataccgagctgctagccgagagattt
tactaccaagccctgtcagtagctcctcagattggaatgcccttcaatcagctgggcacc
ctggcaggcagcaagtactataatgtggaagccatgtattgctacctgcgctgcatccag
tcagaagtgtcctttgagggagcatatgggaacctcaagcggctgtatgacaaggcagcc
aaaatgtaccaccaactgaagaagtgtgagactcggaaactgtctcctggcaaaaagcga
tgtaaagacattaaaaggttgctagtgaactttatgtatctgcaaagcctcctacagccc
aaaagcagctccatggactcagagctgacctcactttgccagtcagtcctggaggacttc
aacctctgcctcttctacctgccctcctcacccaacctcagcctggccagtgaggatgag
gaggagtatgagagtggatatgctttcctcccagaccttctcatctttcaaatggtcatc
atctgccttatgtgtgtgcacagcttggagagagcaggatccaagcagtacagtgcagcc
attgccttcaccctggccctcttctcccacctcgtcaatcatgtcaacatacggctgcag
gctgagctggaagagggcgagaatcctgtcccagcattccagagtgatggcacagatgaa
ccagagtccaaggaacctctggagaaagaggaggagccagatcctgagcctcctcctata
gcaccccaagtgggtgagggcagaaagagccgtaagttctctcgcctctcctgtctccgc
cgtcgccgccacccacccaaagttggtgatgacagtgacctgagtgaaggctttgaatcg
gactcaagccatgactcagcccgggccagtgagggctcagacagtggctctgacaagagt
cttgaaggtgggggaacggcctttgatgctgaaacagactcggaaatgaatagccaggag
tcccgatcagacttggaagatatggaggaagaggaggggacacggtcaccaaccctggag
ccccctcggggcagatcagaggctcctgattccctcaatggcccactggacaccagtgag
gctagcattgccagcaatctacaagccatgtccacccagatgttccagactaagcgctgc
ttccgactggcccccacctttagcaacctgctcctccagcccaccaccgaccctcatacc
tcggccagccacaggccttgtgtcaatggggatgtagacaagccttcagagccagcctct
gaggagggctctgagtcagaggggagtgagtccagtggacgctcctgtcggaatgagcgc
agcatccaggagaagcttcaggttctgatggccgaaggtctgcttcctgctgtgaaagtc
ttcctggactggcttcggaccaaccccgacctcattatcgtgtgtgcgcagagctctcaa
agtctgtggaaccgcctgtctgtgttgctgaatctgttgcctgctgctggcgaactccag
gagtctggcctggccttgtgtcctgaggtccaagatcttcttgaaggttgtgaactgcct
gacctcccctctagccttctgctcccggaggacatggctcttcgtaacctgcccccgctc
cgagctgcccacagacgctttaactttgacacggatcggtccctgctcagcaccttagag
gagtcagtggtgcgcatctgctgcatccgcagctttggtcatttcatcgcccgcctgcaa
ggcagcatcctgcagttcaacccagaggttggcatcttcgtcagcattgcccagtctgag
caggagagcctgctgcagcaggcccaggcacagttccgaatggcacaggaggaagctcgt
cggaacaggctcatgagagacatggctcagctacgacttcagcttgaagtgtctcagctg
gagggtagcctgcagcagcccaaggcccagtcagccatgtctccctaccttgtccctgac
acccaggccctctgccaccatctccctgtcatccgccaactggccaccagtggccgcttc
attgtcatcatcccaaggacagtgatcgatggcctcgatttgctgaagaaggaacaccca
ggggcccgggatgggattcggtacctggaggcagagtttaaaaaaggaaacaggtacatt
cgctgccagaaagaggtgggaaagagctttgagcggcataagctgaagaggcaggatgca
gatgcctggactctctataagatcctagacagctgcaaacagctgactctggcccagggg
gcaggtgaggaggacccgagcggcatggtgaccatcatcacaggccttccactggacaac
cccagcgtgctttcaagccccatgcaggcagccctgcaggccgctgcccacgccagcgtg
gacatcaggaatgttctggacttctacaagcagtggaaggaaattggttga
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integrated database retrieval system
