Spiroplasma syrphidicola: SSYRP_v1c01410
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Entry
SSYRP_v1c01410 CDS
T02677
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ssyr
Spiroplasma syrphidicola
Pathway
ssyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SSYRP_v1c01410 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssyr03400
]
SSYRP_v1c01410 (uvrB)
DNA repair and recombination proteins [BR:
ssyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSYRP_v1c01410 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSYRP_v1c01410 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
P-loop_SecA
AAA_30
AAA_7
AAA_19
AAA_22
AAA_5
AAA_16
Amdase
DUF87
DUF3139
Motif
Other DBs
NCBI-GeneID:
16153061
NCBI-ProteinID:
AGM25737
UniProt:
R4U2Y1
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Position
159495..161459
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AA seq
654 aa
AA seq
DB search
MFKLVSNYQPAGDQPQAIENLLLGLKNNKKNQVLLGATGTGKTFTMANIIEHYNKPTLVM
AHNKTLAMQLYVELKELFPDNRVEYFVSNFDFYQPEAYIPSRDLYIDKDAKQNMELDMMR
LSAFNALTTRKDVIVVASVAAIYGAQDPNEYKKSFFQLNRGEKIGKKQLTNYLVSSGYVR
NDIEQIPGTFSAKGDVIKIVPGWNIKTFIRIDLFGDEIDDICYIDGLNGDVTQRLSTLTI
FPAQDYITSPERLTKAIELIEKELVVRLEELKQEGKNVEAQRLKQRTEYDLDMLRESGIC
SGIENYSRHLDLRQEGEPPYTLIDFFGDDFLTIIDESHMSIPQIRAMYNTDRSRKETLVN
YGFRLKSALDNRPLNFEEFNGKLKNTIYVSATPAEYELELAHQQVAEQIIRPTGLLDPTV
EVKQTVGQIDDIIAQIKERRAKNERVFITTLTIRMSEDLTSYLQEQDIKVAYLHSELKTL
ERSQILLDLRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNTRSLIQTIGRAA
RNAHGHVILYADTMSDAMVQAIKETQRRRAIQEAYNNKYDIIPQTIIKAIRDYTNIRMQD
QKLHKIKNKNSKEYKTAKEGLLQDLRKQMYEASEKLDFEKAAELRDIILEIEAE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagttagtttccaattatcaaccagcaggtgatcaaccacaagcaattgaaaat
ttattattaggacttaaaaataataaaaaaaaccaagtattactgggagcaaccggaact
gggaaaacttttacaatggctaatattattgaacactataataaaccaacattggtaatg
gcccataataaaacattagcaatgcaattatatgttgaattaaaagagttatttcctgat
aatcgggttgaatattttgtttctaactttgacttttatcaaccagaagcttatattccg
agtcgagatttatatattgataaagatgctaaacaaaatatggaattagatatgatgcgc
ttaagtgcctttaatgcgttaactactcgtaaagatgttattgttgttgcatctgtggcg
gcaatttatggggcccaagatcccaatgagtataaaaaatcattttttcaattaaatcgt
ggggaaaaaattgggaaaaaacaattaacaaattatttagtttcgtctggttatgttcgt
aatgatattgaacaaattccaggaacttttagtgcaaagggtgatgttattaaaattgtt
ccgggatgaaatattaaaacctttattcggattgatttatttggggatgaaattgatgac
atttgctatattgatggattaaatggggatgtgacccaacggttatcaactttaacaatt
tttccggcccaggattatattacttccccagaacggttaacaaaagcaattgagttaatt
gaaaaagaattggttgtaaggttggaagaattaaaacaagaaggaaaaaatgtcgaagcg
caacggttaaaacaacgaacagaatatgatttagacatgcttcgagaaagtgggatttgt
tccgggattgaaaactattctcgtcatcttgatttacgccaagaaggtgaaccaccttat
actttaattgatttttttggtgatgattttttaacaattattgatgaatcccatatgtca
attccgcaaattagagcaatgtataatactgaccgaagccggaaagaaaccttagttaat
tatggttttcgcttaaaaagtgcgttagataaccgcccattaaattttgaagaatttaat
ggtaaattaaaaaatacaatttatgtttcagcgacaccagcggagtatgaattagaatta
gcccatcaacaagttgctgaacaaattattcgtccaacgggattattagatccaactgtg
gaagtaaaacaaacggttgggcaaattgatgatattattgcccaaattaaagaacggcga
gcaaaaaatgaacgggtatttattaccactttaacaattcgaatgtctgaagatttaaca
agttatttacaagaacaagatattaaagtagcatacttgcatagtgaattaaaaacatta
gaacgtagtcaaattttattagacttgcgaaaaggggtttatgattgtatagttggggtt
aacttaattcgggaaggaattgatattcccgaagtttcgttgatttgtattttagatgct
gataaacaagggtttttacgtaatacgcgtagtttaatccaaacaattgggcgcgcagca
cgtaatgcccatgggcatgttattctttatgctgatacaatgtctgatgcaatggtccaa
gcgattaaagaaacacaacgtcgtcgggcaattcaagaagcgtataataataaatatgat
attattccccaaacgattattaaagcaattcgtgattatactaacattcggatgcaagat
caaaaattacataaaattaaaaataaaaactcaaaagaatataaaacagcaaaagaagga
ttattacaggatttacgcaaacaaatgtatgaagctagtgaaaaattagattttgagaag
gcggcagaattaagagatatcattcttgaaattgaagcggaataa
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