Spiroplasma syrphidicola: SSYRP_v1c03490
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Entry
SSYRP_v1c03490 CDS
T02677
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ssyr
Spiroplasma syrphidicola
Brite
KEGG Orthology (KO) [BR:
ssyr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SSYRP_v1c03490 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyr03021
]
SSYRP_v1c03490 (rpoD)
Transcription machinery [BR:
ssyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SSYRP_v1c03490 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
PAH_ZNF598
DUF4358
Motif
Other DBs
NCBI-GeneID:
16153272
NCBI-ProteinID:
AGM25943
UniProt:
R4U5R3
LinkDB
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Position
377937..379265
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AA seq
442 aa
AA seq
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MELTKKEVKDMQTFEEFKEYVSKYLEENNNEIEQEKLLSLINDHFEIDDNDVDEYFEELL
SNGVDFSDVTGIEEVEEQPEKPVKKAAEEKIKYKVGGISNETKIQDIIKAYFNVLGTSKI
LTREEEIKYAKMLESKDDEERKYGRDKLITSNLKLVVSVARKHLNRGLDFSDLIEEGNIG
LMKAVDKFDYKRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIERQLT
QELGREPSFDEIAERMGQGMTGEKVREIKRLSIEPVSLEKPIGDEDDTHFGDFVDDKDIF
TPDEYAEKESLREVIDEVFHEILSAREEKVIRMRFGILPTKLRTVLRLAKECEDETFPEL
VQTIKTLDIHYDTPIEKVQSRKNKLIDKHLSKYDSPKTLEEVGREFKVTRERIRQIEAKT
IRKFKPNQATSKAKVLKDFFKG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacaaaaaaagaagttaaggatatgcaaacatttgaggaattcaaagaatat
gttagcaaatatctggaagaaaataataatgaaattgaacaagaaaaattattaagttta
attaatgatcattttgaaattgatgataacgatgttgacgaatattttgaggaattacta
agcaacggagttgattttagcgatgtgacaggaatcgaagaagttgaagaacaaccagaa
aaaccagtaaaaaaagcggcagaggaaaaaattaaatataaagttgggggaatatcaaac
gaaactaaaattcaagatattattaaagcttattttaatgtcctaggaacaagtaagatt
ttaacgcgtgaagaagagattaaatatgctaaaatgcttgaatcaaaagatgatgaagaa
cgcaaatatggtcgtgacaaattaattacttcaaacttaaaattagttgtttcggtggcc
agaaaacatttaaaccggggattagatttttcggatttaattgaagaaggtaatattggt
ttaatgaaagccgttgataaatttgactataaacgtgggtttaagttttcaacttatgca
acatgatggattcgtcaggcaattacccgcgcaattgctgaccaagcccgaacaattaga
attcctgttcatatggtcgaaacaattaataaattaacaagaattgagcgtcagttaacc
caagagttaggtcgtgaaccaagttttgatgaaattgctgaaagaatggggcaaggaatg
actggggaaaaggttcgggaaattaaaagattatcaattgaaccagtatcattagaaaaa
ccaattggcgatgaagatgatacccattttggtgattttgttgatgacaaagatattttt
acccctgatgaatatgcggaaaaagaatcattacgggaagtaattgacgaagtttttcat
gaaattttatcagcacgagaagaaaaagttattcgtatgcgttttgggattttaccaaca
aaattacgaacagtgttacgcctagcaaaagaatgtgaagatgaaaccttcccagagtta
gttcaaacaattaaaacgcttgatattcactatgatactccaattgaaaaagttcagagt
cgtaaaaacaaattaattgataaacatttatcaaaatatgattcaccaaaaactttagaa
gaagtagggcgggaatttaaagttacaagagaacgaattcgtcaaattgaagctaaaaca
attcgcaaatttaaaccaaatcaagcaacatcaaaagcaaaagtattaaaagatttcttt
aaaggataa
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