Spiroplasma syrphidicola: SSYRP_v1c04120
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Entry
SSYRP_v1c04120 CDS
T02677
Symbol
oppD
Name
(GenBank) oligopeptide ABC transporter ATP-binding protein
KO
K15583
oligopeptide transport system ATP-binding protein
Organism
ssyr
Spiroplasma syrphidicola
Pathway
ssyr02010
ABC transporters
ssyr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ssyr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SSYRP_v1c04120 (oppD)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SSYRP_v1c04120 (oppD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SSYRP_v1c04120 (oppD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssyr02000
]
SSYRP_v1c04120 (oppD)
Transporters [BR:
ssyr02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Oligopeptide transporter
SSYRP_v1c04120 (oppD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
oligo_HPY
AAA_21
SMC_N
TniB
AAA_22
AAA_16
DUF7342
NPHP3_N
RNA_helicase
Cmyb_C
AAA_29
ATPase
PRK
DUF4407
Motif
Other DBs
NCBI-GeneID:
16152870
NCBI-ProteinID:
AGM26005
UniProt:
R4UIK4
LinkDB
All DBs
Position
448092..449783
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AA seq
563 aa
AA seq
DB search
MSNEVIISIKDLVINFKTRANILTAIRNISFDIYDGETLAIVGESGSGKSVMTKTFTNML
EKNGWINSGEIIYYPSQNSLADQNTYFRKPVDLVEFNKISLENSLIKTILKYNRRLIKSL
NQQITDLNKMTVENLDAKILQLTTTIKELKAKIDFKASHKLAKTITAHETELDKVTNFKT
ILSDQEKYDQAIKRLEQKITLAEAEIKKVLRLNWRDRIFLKSNLKILKNYLANKQTVKAT
QQQRISRYFAKKQFTTPFLEKVQQFNTEMFNGQTIDAQNFNDLLEQWEPIKSFDFINKKR
LVKQITKLRGQTIATIFQDPMTSLNPLLSVGFQISEVIRKHRKLNRSQAKQEAILLLEKV
GIKNAKKRYHDIPGMYSGGMRQRVVIAIALACQPKILICDEPTTALDVTIQAQILDLIKE
LQKEYKFTVIFITHDLGVVATIADRVAVMYAGQIIEYGTVDDLFFDSRHPYTWALLSSLP
QFGAKGEELYSIPGSPPSLYTKVVGDPFAPRNKYAMKIDYLIEPPMFEVSPSHYAKTWLL
DPRAPKVARPKQLKDLDNIIQND
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgaagtaatcatttcaattaaagatttagtaattaattttaaaaccagagca
aatattctaacggcaattcggaatatttcttttgacatttatgatggagaaacattagca
attgttggggaatcaggtagtggaaagtcagttatgacaaaaacttttactaatatgtta
gaaaaaaatgggtgaattaatagtggggaaattatttattatccatctcaaaacagttta
gctgaccaaaatacctattttcgtaagcctgttgatttagttgagtttaacaaaatttct
ttagaaaatagtttaattaaaacaattttaaagtataaccgccgtttaattaaaagttta
aatcaacaaattactgatttaaataaaatgacagtcgaaaatcttgatgctaaaattttg
caattaacaacaacaattaaagaattaaaagcaaagattgattttaaagcttcgcataaa
ctggcaaaaacaatcaccgcgcatgaaacagagttagataaagttactaattttaaaaca
attttatctgaccaagaaaaatatgatcaagcgattaaacgcttagaacaaaaaattact
ttagctgaagcagaaattaaaaaggtcttacgattaaattgaagagatcggatcttttta
aaaagtaatttaaaaatcttaaaaaactatcttgccaataaacaaacggttaaagcaacg
caacaacaacgaatcagccgttattttgccaaaaaacaatttacaacgccgtttttagaa
aaagttcaacaatttaatactgagatgtttaatggtcaaacaattgatgcccaaaatttt
aatgatttattagaacaatgagaaccaattaaaagttttgattttattaacaaaaaaaga
ttagtaaaacaaattaccaaattacgaggacaaacaattgcgacaatttttcaagatcca
atgacatcattaaatccattattatcggttggttttcaaatttcggaagtaattcgtaaa
caccgcaaattaaatcgttcacaagcgaaacaagaagcaattttattattagaaaaagtt
ggaattaaaaatgccaaaaaacgttatcatgacattcctggaatgtattctggaggaatg
cgccaacgggttgttattgccattgccttagcctgtcagccaaaaatcttaatttgtgat
gaaccaacaacagctttagatgtcacaattcaagcgcaaattttagatttaattaaagaa
ttacaaaaagaatataagtttaccgtaatttttattacccatgatttaggagttgttgcg
acaattgctgatcgtgttgccgtgatgtatgctggtcaaattattgaatatgggacagtt
gatgatctattctttgattctcgtcacccatatacgtgagcgttattatcatcattacca
caatttggagccaaaggggaagaattatattcaatccccggatcacctccatcactttat
acaaaagtagttggagatccatttgccccacgaaataaatatgcgatgaaaattgattat
ttaattgaaccgccaatgtttgaagtaagcccaagtcattatgcaaaaacatgactatta
gatcctcgtgccccaaaagtggcccgcccaaaacaattaaaagatttagacaatattatt
caaaatgattaa
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