Serratia symbiotica: SCc_049
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Entry
SCc_049 CDS
T01672
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCc_049 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssz03019
]
SCc_049 (deaD)
03009 Ribosome biogenesis [BR:
ssz03009
]
SCc_049 (deaD)
Enzymes [BR:
ssz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCc_049 (deaD)
Messenger RNA biogenesis [BR:
ssz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCc_049 (deaD)
Ribosome biogenesis [BR:
ssz03009
]
Prokaryotic type
rRNA helicases
SCc_049 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
dsRBD2
Motif
Other DBs
NCBI-ProteinID:
AEW44239
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All DBs
Position
complement(77392..79275)
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AA seq
627 aa
AA seq
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MRHVYMTIELEISFTNLGLSAPIISALTDLGYEKPSPIQAECIPQLLNGRDVLGMAQTGS
GKTAAFSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTVFSKHMHGVNVVALYGGQR
YDVQLRTLRKGPQIVVGTPGRLLDHLKRGTLSLSNLSGLVLDEADEMLRMGFIDDVETIM
AEIPADHQTALFSATMPEAIRRITKRFMKDPQEVRIQSNITTRPDISQSYWMVDNIRKNE
ALIRFLETEDFDAAIIFVRTKNATLEVSEALERSGYISAALNGDMNQALREQTLERLKDG
RLNILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER
RLLRNIERTMKLTIPEVKLPNSALLGERRLAKFAAKVHQQLESHNLDMYRALLTKLQPTN
DLDIETLAAALLKMAQGERPLILPPDPVYKPRQRRDFNDFDNRSHERRSNIRTIRRESDR
AQRERRDVGEIQLYRIEVGRDDGVEVRHIVGAIANEGDINSRYIGNIKLFASYSTIELPK
SMPSEILNHFTRTRILNKPINMQLVNDTRSSERNGHNRPCRSERRESTARHYTSGENRSD
TINKDKKSISQNNNSVPTSSRRRFNDV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaggcacgtatacatgactattgagcttgaaatatcttttactaatctagggctgtct
gctccaataatttccgctctaactgatttaggctatgaaaaaccatcgccaatacaggct
gaatgcattcctcagctattaaatgggcgcgatgtcctgggtatggcacagactggtagc
ggtaaaacagcagctttttctctaccactattacataatttacaagctgacctcaaggcg
cctcagatcctagtattagcaccaacccgtgaactagcagttcaagttgctgaagctatg
actgttttttctaaacatatgcatggcgtgaacgttgtagctctatacggcggccaacgt
tatgatgttcagttacgcaccttacgcaagggaccacaaattgtagtaggtactcctggt
cgtctattagaccatctaaaacgcggcaccttaagtctttctaacttaagtggtttagta
ttagatgaagcagacgaaatgctgcgcatgggctttattgatgacgtagaaactattatg
gccgagatcccagctgaccatcaaacagcactattctctgctactatgccagaagcaatt
cgccgtattactaaacggttcatgaaagatccacaggaagtacgcattcaatctaatatt
actacgcgtccagacatcagccaaagctattggatggtggataatatccgtaaaaatgaa
gcactaatccgttttcttgaaactgaagactttgatgcggctattatttttgtgcgtact
aaaaatgcaacgctagaggtgtctgaagcgctagagcgcagtggttatattagcgcagca
ctaaatggtgatatgaatcaagcattacgcgaacaaaccctagaacgactaaaagatggt
cgcctaaacatcctgatagctacggatgttgcggctcgtggtttggatgttgagcgtatt
agtttagtagtaaactatgatatcccaatggactctgagtcttacgttcaccgtattggc
cgtactggtcgtgctggtcgtgctggtcgtgcgttactgtttgtagaaaatcgtgaacgc
cgattactacgaaacattgagcgcaccatgaaactaaccattccagaagtaaaactacct
aactcagcactacttggtgaacgtcgtctagcaaaattcgctgctaaagtacatcaacaa
ttagaaagtcataatttagatatgtatcgtgcactattgacaaaactacagccgacaaat
gatctggacatagaaactctagctgcagcattacttaaaatggcgcaaggtgaacgtcca
ttaattctccctccagaccctgtatataaaccacgtcagcggcgtgattttaatgatttt
gacaaccgtagccatgagcgacgtagtaatatacgcactattagacgtgaatctgatcgc
gcccaacgtgaacgccgtgatgtcggcgagattcaactctaccgtattgaagtgggtcgt
gacgatggtgtggaggtacgtcatatcgttggtgcaatagcaaatgaaggtgacattaat
agtcgctatattggtaatattaagctatttgcctcctattctactatcgaattaccaaaa
agcatgccaagcgaaattctcaatcactttacccgtacccgtatcctaaacaaaccaatt
aatatgcaactagtgaatgatacgcgctccagtgaacgtaacggtcataatcgtccatgc
cgcagcgaacgtcgcgaaagcacagcgcgtcattatactagtggcgaaaatcgtagcgat
actattaacaaagacaaaaaatcaatatcacaaaataataactcagtgcctacatcttct
cgtcgtcgctttaatgatgtataa
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