Serratia symbiotica: SCc_199
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Entry
SCc_199 CDS
T01672
Name
(GenBank) exodeoxyribonuclease V, a chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SCc_199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_199
Enzymes [BR:
ssz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SCc_199
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SCc_199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
NAT10_TcmA_helicase
Viral_helicase1
AAA_11
UvrD-helicase
AAA_22
SH3_13
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_7
DEAD
AAA_28
T2SSE
FtsK_SpoIIIE
CbiA
NACHT
MukB
ATPase
TrwB_AAD_bind
SRP54
AAA_24
UvrD_C
AAA
NTPase_1
Zeta_toxin
Flavi_DEAD
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AEW44372
LinkDB
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Position
394055..395902
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AA seq
615 aa
AA seq
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MITLLNRAVGLGVLRPLDIQFANIVATEDQPDIFLAAACVSAEVGIGNVCLMLDQMRMGQ
LFTGLPPQLAKAIWLEAGQPDIAQWRRRLITCSAVSNGSSAAPLVLQGERLYLQRMWQSE
GEVAAFFSSSDEYKLVDDSELRNVLDQLFIPTNGKLDWQKIAAAVAVTRRIVVISGGPGT
GKTTTVTKLLAALIQLHKCMHLRIALAAPTGKAATRLTESLANAVCKLDLTPAQYAQFPT
EATTLHRLLGMQFNSQRIYDRYDNKLDLDVLVVDEASMIDLSMMARLIRALPKYTRVIFL
GDRNQLSSVEPGAVFGDICSFSEQGYSKSRAAELSSLSGYVLRGQQVQVESLVRDSLCLL
RKNYRFDAKSGIAQLARAVNVGDIALAVKVLSGGFRDVMDYSLATTEEYQALLVMCVAGY
QNYMEQVIVRDDAITILKTFSSFQVLCALRTGLFGVDGLNQQIELELRRSNLIQSTQGNW
YLGRPIMIERNDSVLGLYNGDIGITLETGRGKLGVYFLLPNGGIKLVQPNRLPAHKTAYA
ITVHKSQGSEFDHIALVLPNYFLSLLTRELIYTAITRARTCVSLYSVRAVLIRAICTRTW
RCSGLIERLRAGNKR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgataactttattaaatcgggcagttgggcttggtgtgttgaggcctttagatattcag
ttcgctaatatagttgcaacagaggatcagcctgatattttcctggctgctgcttgcgta
agtgcggaggtaggtattggtaatgtttgcttgatgttagatcagatgaggatggggcaa
ttgtttacaggattgccgccgcagttggcaaaagctatctggttagaagctgggcagcca
gatatagcccaatggcgccgtcgccttattacatgcagtgcagttagtaacggcagtagt
gctgctcctctggtattgcaaggtgagcgtctgtacttacagcgtatgtggcagagtgaa
ggtgaggtagcggcattttttagtagttcagacgagtataagttagtggatgattctgag
ttacgcaatgttctcgatcagttatttatcccgactaacggtaaactagattggcagaaa
attgccgctgcagttgcggtaacccggcgcattgtagtgatttccggcggcccaggaact
ggtaaaactacaactgtgactaaattattagctgcattaatacagctgcataagtgtatg
catttacgtattgcattagcggcaccaacaggtaaagcagctacgcgactgacggagtct
cttgctaatgcggtttgtaagctagatttaaccccagcgcagtatgcacaattccctact
gaagctacaacattgcatcgactattgggtatgcagtttaacagccagcgtatctatgat
cgttatgataacaagttggatttagacgtgcttgtggtagatgaggcatcaatgattgat
ttatcaatgatggcacggttaattcgcgctttgccaaaatatacccgagtgatttttctt
ggtgaccgtaatcagttatcttcggtagaacctggcgcggtatttggtgatatttgtagt
tttagtgaacagggttacagtaaaagtcgtgctgcagagttaagtagtttaagtgggtat
gtattacgggggcaacaggtacaggtagaatcattggttcgcgatagcttatgcttgtta
cgcaagaattatcgatttgacgctaaatctggcattgctcagttagcgcgcgcagtcaat
gtgggtgatatagcactagcagttaaagtacttagtggtggttttagagatgttatggat
tattctctggctacaactgaagagtatcaagcgctattagtaatgtgtgttgcgggttat
caaaattatatggagcaagtcatcgttcgggatgatgctatcacaatattaaaaacattt
agtagttttcaggtattatgtgcactgcgtacaggattatttggtgttgatggattaaat
cagcagattgagcttgaattaaggcgctctaacttaattcagagtacgcaggggaattgg
tatctagggcgaccaatcatgattgagcgtaacgatagtgtgctggggttatataatggt
gatattggcattactctagaaactgggcgtggtaagttaggtgtttattttcttttgccg
aatggcggaattaagttagtgcaaccaaatcgtttacccgcgcacaaaactgcttatgcg
ataactgtgcataaatctcagggttctgaatttgatcatatagcgttagtattgccgaac
tattttctatccttactgactcgtgaattaatatatactgctattactcgcgcgcgtaca
tgcgtgtcattgtattcggttagagcagttttgataagggctatttgtacacgcacttgg
cgttgcagtggcctaattgaacgtttacgagccggtaacaaaagatag
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