Serratia symbiotica: SCc_244
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Entry
SCc_244 CDS
T01672
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ssz
Serratia symbiotica
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssz03009
]
SCc_244 (srmB)
Enzymes [BR:
ssz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCc_244 (srmB)
Ribosome biogenesis [BR:
ssz03009
]
Prokaryotic type
rRNA helicases
SCc_244 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Ins_allergen_rp
AAA_22
Lipase_GDSL_3
Motif
Other DBs
NCBI-ProteinID:
AEW44413
LinkDB
All DBs
Position
complement(485577..486887)
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AA seq
436 aa
AA seq
DB search
MDVVITHFSELDLDERLLFALYDKGYDRPTAIQATTIPHALKGRDVLALAPTGTGKTAAF
LLPVLQHLLDFPRHHYGPARILILTPTRELAIQVANQACELAAYTLLNISTITGGVSYTN
HVKIFNQNQDMVVATTGRLLQYIKEENFDCSAVEILILDEADRMLDMGFAQDIETIAIKT
SDRRQTLLFSATLEGRMFHKFAKQIQVEPVKIETNILQQECKKIYQWYYHADNVKHKTAL
LIHILKQPEVKKSVIFVRKRERVHELVAWLREASINTCCYLEGKMVQAQRNKAIQCMMEG
KMNILVATDIASRGLDITDITHVFNFDMPRTADIYLHRIGRTSRAGSTGIAISLIEAHDY
CVLKKVSRYLNEPLKSRVIDEIPQKTKILKDKNNGKPSKKVLIKRIKENKKNKIKNKVKL
RHRNIKNIGKRRQSKN
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtggtaattactcatttttccgaacttgatctcgatgaacgactactcttcgct
ttatatgataaaggctacgatcgcccaactgccattcaagcaacaacgatcccacatgca
ttaaaaggacgagatgtattagctttagctccgactggaaccggaaaaactgctgcattt
ttactacctgttttacaacatcttctcgactttccgcgtcatcattatggcccagcgcgt
attttaatccttaccccaacacgcgagttagcaatacaagtagctaaccaggcatgtgaa
ttagcggcatatactttgctcaatatctccacgatcaccggcggtgtatcctacactaat
cacgtaaaaattttcaatcaaaaccaagatatggtcgtcgctacaactggtcgtctactt
caatatattaaagaagaaaattttgattgcagcgcagtggaaatacttatcttagatgaa
gctgaccgcatgctggacatgggatttgctcaggatattgaaactattgcaatcaaaact
agcgaccgtagacaaacattactattctctgctaccttagaaggtagaatgtttcataaa
tttgctaaacaaattcaggtagaaccggtaaaaatagaaactaatatattacaacaagaa
tgtaaaaaaatttaccaatggtactatcatgccgataacgtgaaacataaaacagctcta
ctaatacacatactcaagcaaccagaagtaaaaaaatcagtgatttttgtgcgtaaacgt
gaacgagtacatgagctagttgcttggttacgtgaagctagcattaatacctgctgctac
cttgaaggtaaaatggtacaagcgcagcgcaataaagcaatacaatgtatgatggagggt
aagatgaatatactagtcgcgactgatattgcctcacgtggtctagatattactgatatt
actcatgtatttaattttgacatgccacgtactgcagatatatacttacaccgtattggt
cgcactagtcgcgctgggagtacgggtattgctatttcactcattgaggcacatgactac
tgtgtattaaaaaaagtgagtcgttacctaaatgagccattaaaatcacgagtaattgac
gaaataccgcaaaaaactaaaatactaaaagataaaaataacgggaaaccttcaaaaaag
gtgctaattaagcgcataaaagaaaacaagaaaaacaaaataaaaaacaaagtaaaattg
cgacatcgtaatattaaaaatatcggcaagcgacgccaatctaagaattaa
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