Serratia symbiotica: SCc_258
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Entry
SCc_258 CDS
T01672
Symbol
holA
Name
(GenBank) DNA polymerase III, d subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03030
DNA replication
ssz03430
Mismatch repair
ssz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCc_258 (holA)
03430 Mismatch repair
SCc_258 (holA)
03440 Homologous recombination
SCc_258 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssz03032
]
SCc_258 (holA)
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_258 (holA)
Enzymes [BR:
ssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCc_258 (holA)
DNA replication proteins [BR:
ssz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SCc_258 (holA)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SCc_258 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
AEW44426
LinkDB
All DBs
Position
complement(521269..522297)
Genome browser
AA seq
342 aa
AA seq
DB search
MIYLYPEQLYTQLQKELRTCYLLNGNEPLFLQESQDLIRQAAKQRYSEYYSIYLDAYTDW
DIIFSICQKMSLFASSQILSLVLPEHGPNMVIEEHLLKLANLLHDEIILILRGPLLTTIQ
KNSPWFKIISLKAVCINCQGPQQNQLPYWVAKRAKTMNLELDNEANQLLCYCYEGNLLAL
SQALGRLALLYPDGKLTLPRVEQSVDDAAYFTPLHWIDAILTGDSKRTWHILQLLRQQEI
KLTILIRILQRELLLLLTLKRGVASIPLCTLFDQHQVWQHRRNLIAKAVQHLSNKTLRQA
VQRLVQIELAVKQHDIQLDWLSLEMISMFLCGKNLPTNFTYD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgatttacctttatcctgaacaactttatactcaactacaaaaagagttacgcacatgt
tatttgttaaatggtaatgaaccactatttttacaagaaagccaagatttaatccgacaa
gcagcaaaacagcggtatagcgagtactacagcatataccttgatgcatatactgactgg
gatatcatttttagtatttgccagaaaatgagcttatttgctagtagccaaatattatca
ctcgtgttaccggaacatggtcctaacatggtaattgaggagcatttactcaagcttgct
aacctactgcatgatgaaataatactaatattacgcggtccactgttaacaacaatacag
aaaaacagcccatggtttaaaataattagtctaaaggctgtctgcattaattgccaagga
ccacagcaaaaccaacttccatattgggttgctaagcgtgctaaaactatgaatctagaa
ttagataatgaagcaaaccaattattatgttactgctacgaaggcaacctactagcatta
tcgcaagcactaggtagattagctctactttatcctgatggcaaactaactctaccgcgc
gtcgaacaatcagtagatgacgccgcatattttacaccactccattggattgatgctata
ttaacaggcgatagcaagcgcacatggcatattttacaattgctacgacaacaggagatt
aaattaacgatactaatacgtattttacaacgcgaactactgctattactcaccttaaaa
cgcggtgtagcttcaatacccctatgcactctatttgaccagcatcaggtatggcaacat
cgccgcaatcttatagccaaggcagtacaacatctttctaataaaacactccggcaggct
gtgcaacgactagtacaaattgaactagcagttaaacaacatgatattcagttggattgg
ctatcattagaaatgatatcaatgtttctgtgtggaaaaaatctacctacaaattttact
tatgattaa
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