Serratia symbiotica: SCc_359
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Entry
SCc_359 CDS
T01672
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ssz
Serratia symbiotica
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssz03016
]
SCc_359 (rnb)
Enzymes [BR:
ssz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCc_359 (rnb)
Transfer RNA biogenesis [BR:
ssz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SCc_359 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEW44511
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All DBs
Position
758198..760132
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AA seq
644 aa
AA seq
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MFQDNALLAKLKQQLHSQTLRVEGVVKSTKKKFGFLEINSQKSYFIPPPYMKKVMHGDRV
IAMLHNDKEREVAEPEVLIEPFLSRFVGRVYIRDRRLYIVPNHPLLKEAIQCYPVRTLTY
NFKSGDWAVARMRYHPLKDNHGFNADLTSFVAHAEDYFAPWWVTLAHHDLEKEAPEMVSV
SEQGTTLVREDLTGLDFLTIDSSSTQDMDDALFVVDNHDDSLELIIAIADPTTYIQQGST
LDNIACKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNECRYVLACRVTITANGALGNHIQF
FAAKIKSKAKLVYNEVSDWLEGVVGWQPPSDTIAQQLTLLKGVYHKRNSWRHKHALVFKD
RPNYRFVLDDKGDVLEIITEHRRIANRIVEECMIAANICAAKVLRDHLGFGIYNVHAGFD
PLLVTHVVNELRDNGIAIDAEQLLGLKGFCKLHRYLNTSSTKFLDSRIRRFQTFAEVSTT
PGAHFGLGLDAYATWTSPLRKYGDMINHRLLKAIITHQPIEKPLDIVTAQITERRRLNRM
AERDVCDWLYARYLRDKVGTNKLFLAEVIDITRSGMYVRLLDNGAVAFIPVLFIHVVRND
VQCNQEAGTVQIKGEVIYRQSDILQITIAEVRMETCNIIAKLAH
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatgcattactagcaaagttaaaacagcaacttcactcccagactcta
cgtgttgaaggcgttgtaaaaagcactaagaagaaatttggttttcttgagattaatagt
caaaaaagttattttattcccccgccgtatatgaagaaagttatgcacggtgatcgtgta
attgccatgctgcataatgataaagaacgtgaagttgcagagccggaagttctcatagag
ccttttttatcgcgctttgttggacgcgtatatatacgtgatagacggttatacattgtg
cctaatcatccattgctgaaagaagctattcagtgttatccagtacgtacattgacctat
aattttaagtctggtgattgggcggtcgcaagaatgcgctatcatccactaaaagataat
catggcttcaatgctgatttaactagttttgttgctcatgctgaagattattttgcacct
tggtgggttacattggcgcaccatgatctcgaaaaagaagcgcctgaaatggttagtgtc
agcgaacagggcactactcttgtgcgtgaagatctcactgggctggattttcttactatt
gatagctctagcacccaagatatggacgatgcattatttgtagttgataatcatgatgat
tcattagaattaattatcgcaatcgctgatccaactacctatatccagcaaggtagcaca
ctagataatatcgcttgtaagcgtgcttttactaattatttgccaggatttaatatccca
atgttgccacgcgatttgtctgataacttatgctcattacgtccaaatgagtgccgctat
gtgttagcttgtcgcgtgactattactgctaatggtgctctgggtaatcatattcaattt
ttcgctgctaagattaaatcaaaggcaaaattagtttacaatgaagtctcagattggtta
gaaggtgttgtaggttggcaaccgccaagcgatactattgcccaacaactcaccttattg
aaaggtgtctatcataagcgtaatagttggcgtcataagcatgccttggtttttaaagat
cgccctaattatcgctttgtattagatgataaaggtgatgtattagagattattactgag
catcgccgcatcgctaaccgtattgttgaagaatgtatgattgctgctaatatttgtgcc
gctaaggtgctacgtgatcatctgggattcggtatatataatgtgcatgctggttttgac
cctttacttgtaacacatgtagtaaatgagttacgggataatggtatagcaatagacgca
gaacaattattaggattgaaaggtttttgtaagttacatcgttacttaaatactagttct
actaagttccttgatagtcgtatccgtcgttttcagacttttgctgaagttagcactacg
ccaggggcacattttggtttgggtctagatgcttatgctacatggacttcaccacttcgt
aaatacggagacatgattaatcatcgcttattaaaagcgattattactcatcagccaata
gaaaagcctctagatatagttactgcacagataactgaacgccggcgattaaatcgtatg
gctgaacgtgatgtttgcgattggctctatgctcgttatttgcgcgataaagtaggtact
aataagttatttttagcagaagttattgatattacgcgtagtggcatgtatgtgcgtcta
ttggataacggggctgttgcctttattcctgtactatttattcatgtcgtgcgtaatgat
gtacagtgtaaccaggaagcaggtacagtgcaaatcaagggagaggtgatttatcgccaa
agtgatatcctacagattactattgctgaagtacgcatggaaacttgtaatataattgct
aagctggctcactag
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