Serratia symbiotica: SCc_374
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Entry
SCc_374 CDS
T01672
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssz
Serratia symbiotica
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssz03032
]
SCc_374 (topA)
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_374 (topA)
Enzymes [BR:
ssz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SCc_374 (topA)
DNA replication proteins [BR:
ssz03032
]
Prokaryotic type
DNA Topoisomerases
SCc_374 (topA)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SCc_374 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
Zn_ribbon_recom
Toprim_2
Toprim_4
CEP104_ZnF
Motif
Other DBs
NCBI-ProteinID:
AEW44526
LinkDB
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Position
complement(804339..806936)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNGYIVKSSIGHIRDLPNSNSSKKHSTNAIINKVKKKTK
NNEKTALLSRMGVDPYHGWKAHYEILSGKEQVVSELKALAEKAEHIYLATDLDREGEAIA
WHLQEVIGGDNKRFSRVMFNEITKKAIQQAFQQPGELNIARVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFLPEEYWALHADLLAEGNTAIQMKVTH
AYDKPFKPSNYQQISVILKSLEKAHYTVLDREDKLMSSKPSAPFITSTLQQAASYRIGFS
VKKTMLMAQLLYEEGYITYMRTDSTSLSQDALIMARDYIRNNFGAHYLPKEPNHYNSQEN
SQEAHEAIRPSDVNVIAEQLKTTKSDAQKLYQLIWRQFVACQMVPAQYNATTLLVKANDF
QLRAKGRILGFDGWNKVIPALYKDEECHTLPFIKIGSKLRLQKLTPSQHFTKPPARYNEA
SLVKELEKRNIGRPSTYASIISTIQERGYVRVESRRFYAEKMGEIVTDRLTENFCELMNY
DFTACMEDALDQVANNQAEWKLMLDKFFGNFSGQLEKAKKNPEEGGMRPNQMVVTNINCP
TCKRTMGIRTASTGVFLGCSGYALPSKERCKTTINLIREAEIFDIIEKDDAETNALRART
RCEKCETAMDSYLIDNQYKLHVCGNNPACDGYHLEEGNFRLKGSNSSVVECDKCGSNMYL
KIGRFGKYMGCSHETCKNTRKILRNGDIAPPKEDPTPLPELLCKKSNAYFVLRDGSDGLF
LAANTFPKSRETRAPLVEELSRFKDRLPEKIRYLADAPEIDNEGNKTLVRFSRKIKQQYV
TSEKDGKVTNWSAFYIDGKWVVNIK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttggggaatggctatatagttaaatctagcattggccatatacgtgatttgccaaatagc
aactcatcaaaaaaacatagtactaatgcaataataaataaagttaaaaagaaaactaag
aacaatgagaaaacggcattacttagtcgtatgggcgttgatccttatcacggctggaag
gcgcattatgaaatattatctggtaaagaacaagtagtatcagaattaaaagcgctagca
gaaaaagctgagcatatttatcttgctactgaccttgatcgagaaggtgaggctattgcc
tggcacctgcaagaggttattggcggagataacaaaagatttagtcgagtaatgtttaat
gaaatcactaaaaaagctattcaacaagcatttcagcaaccaggtgaactaaatattgct
cgtgttaatgcacagcaggcgcgccgttttatggatcgtgtagtaggttatatggtctct
cccttgctttggaaaaagattgctagaggcctttctgctggtagagttcaatcagtagcc
gtccgattagtagttgagcgtgagcgcgatattaaagcttttttaccggaagaatattgg
gctctacatgcagatcttttagcggagggtaatactgcaatacagatgaaagtaactcat
gcttatgataagccattcaaaccatctaattaccaacaaatatctgttattctaaaatca
cttgaaaaagcccattataccgtattggatagggaagataaattaatgagtagtaagcca
agcgctccgtttattacatctactctacaacaagccgctagttatcgcataggatttagt
gtaaagaaaactatgttaatggctcagctgttatatgaagaaggttatattacctatatg
cgcactgattctactagccttagtcaagatgcactcattatggcacgtgactacattcgt
aataattttggcgctcattatttaccaaaagaacctaatcactataacagtcaggagaac
tcacaagaagcgcatgaggcgattcgtccttcagatgttaacgtaattgcagagcagtta
aaaaccacaaaatcagatgcacaaaaattatatcagttaatttggcgacaatttgtagct
tgtcagatggtaccagcacaatataatgccactacattattggttaaagcaaatgatttt
cagttacgtgctaaggggcgcatattaggcttcgatggttggaataaggtaattcctgcg
ctatataaagatgaagaatgccatacattaccatttattaaaattggtagcaagttacgt
ctacagaaattgaccccaagtcaacatttcactaagccgccagcacgttacaatgaagca
tctttagttaaagagctagaaaaacgtaatattggtcgtccatccacctatgcatctata
atctcaacaatccaggagcgtggctatgtacgagtagaaagccgacgtttttatgcggag
aaaatgggagaaattgttactgatcgattgacagaaaatttctgtgaattaatgaattat
gactttactgcctgcatggaagacgcattagatcaagtggcaaataatcaagcagagtgg
aaattaatgctggataaatttttcgggaatttcagtgggcagctagaaaaagcaaaaaaa
aatccagaagaggggggtatgcgtccaaaccaaatggtagtaactaatattaattgtcca
acatgtaaacgaacaatgggcattcgaactgctagcactggagtatttctcggttgttct
ggttatgctcttccatcaaaggagcgatgcaaaaccactataaatttaatacgggaagca
gaaatatttgatataattgaaaaagatgacgcagaaactaacgcgctacgcgcccgtaca
cgttgtgaaaaatgcgaaacagctatggatagctacctgattgataatcaatataaatta
catgtctgtggcaataaccctgcttgtgatggatatcacctcgaagaggggaatttccgc
ttgaaaggttctaatagttcagtagttgagtgtgacaaatgtggttctaacatgtaccta
aaaataggccgttttggaaaatatatgggctgttctcatgaaacatgtaagaatactcgt
aagatcctgcgcaacggcgatattgcgccgcctaaagaagacccaactccattaccagaa
cttttatgtaaaaaatctaatgcgtatttcgttctacgtgatggctcagatggcttattt
ttagctgctaacaccttccctaaatctcgtgaaacccgagcgccgctagtagaagaacta
tctcgctttaaagatcgtcttccagaaaaaattcgttatctagcggatgcgccagagatt
gataacgaaggcaataaaacactagtacgttttagccgtaaaattaaacaacaatatgtt
acttcagagaaagatggtaaagttactaactggtctgccttctatattgacggcaagtgg
gtagtaaatataaaataa
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