Serratia symbiotica: SCc_485
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Entry
SCc_485 CDS
T01672
Symbol
hupB
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ssz
Serratia symbiotica
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssz03032
]
SCc_485 (hupB)
03036 Chromosome and associated proteins [BR:
ssz03036
]
SCc_485 (hupB)
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_485 (hupB)
DNA replication proteins [BR:
ssz03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SCc_485 (hupB)
Chromosome and associated proteins [BR:
ssz03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SCc_485 (hupB)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SCc_485 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
AEW44630
LinkDB
All DBs
Position
1061683..1061955
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSQLIDKIATGADISKASAGRALNAVIASITDSLKSGNNVSLVGFGTFIVRERSARTG
RNPQTGKEIAIAATKVPTFRAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaatcacaactgatcgataaaattgctacaggtgctgatatttctaaagcgtca
gcggggcgtgctttaaatgcagtaattgcttctattaccgactccttaaaatcaggtaat
aatgtatccctagtaggttttggtacctttattgtacgcgagcgttcagcgcgtactggg
cgaaacccacaaacaggtaaagaaatagctattgcggcaactaaagtgccaacttttcgt
gcaggaaaagcgcttaaagacgcagtaaattaa
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