Serratia symbiotica: SCc_674
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Entry
SCc_674 CDS
T01672
Symbol
rpoA
Name
(GenBank) RNA polymerase, a subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCc_674 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssz03021
]
SCc_674 (rpoA)
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_674 (rpoA)
Enzymes [BR:
ssz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCc_674 (rpoA)
Transcription machinery [BR:
ssz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCc_674 (rpoA)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCc_674 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AEW44799
LinkDB
All DBs
Position
1520577..1521566
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AA seq
329 aa
AA seq
DB search
MHGSVTEFLKPRLVDIEQISATHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVIVQGKDEAILTLNKSGIGSVTAADIIYNDD
VEIIKPHHIICHLTDENATINMRIKVQRGRGYVPAAARINSEDDERPIGRLLVDACFSPI
ERIAYNVEAARVEQRTDLDKLIIEMGTNGTIDPEEAIRRAATIMAEQLEAFIDLRDVRQP
EIKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRTLSLGMRLENWPPSSITDE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcatggttctgtaacagagtttcttaaaccaagactggtagatatcgagcaaattagc
gcaacacatgctaaggtaacccttgaacctttagagcgtggcttcggccatactcttggt
aatgcactgcgccgtattctgctttcatctatgccgggttgtgcagtaactgaagttgag
attgatggcgtactacatgagtacagtacaaaagaaggtgtgcaagaggacatcctagag
attctacttaacctcaaagggttagcagtaatagttcaaggaaaagacgaagcaattctt
acactaaataaatctggcattggctctgtgactgctgctgacatcatctataatgatgat
gttgaaattatcaaaccacatcatattatttgccatttgaccgatgaaaacgctactata
aacatgcgcatcaaagttcagcgcggacgcggttatgtaccggccgcagctagaattaac
tcagaagatgatgagcgaccaattggtcgcctgttagttgatgcctgcttcagccctata
gagcgtattgcatataacgttgaggcagcacgtgtagaacagcgtactgacctggataaa
ctaataatagaaatgggtacaaatgggacaattgatcctgaagaagcaattcggcgtgca
gccaccattatggccgaacaactcgaagcatttattgatctacgtgatgtacgtcaacca
gaaataaaagaagaaaaaccagagtttgatccaatcttactaagacctgtagatgattta
gagttaactgtacgttctgcgaattgccttaaggcagaagctatccattatattggtgat
ttagtacaacgcacagaagttgagttattaaaaacaccaaacttaggtaaaaaatctctt
actgagattaaagacgtacttgcatcacgcacgctatccctaggcatgcgcctggaaaac
tggccaccatcaagtattactgacgagtaa
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