Serratia symbiotica: SCc_686
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Entry
SCc_686 CDS
T01672
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssz
Serratia symbiotica
Pathway
ssz03420
Nucleotide excision repair
ssz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCc_686 (uvrD)
03430 Mismatch repair
SCc_686 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssz03400
]
SCc_686 (uvrD)
Enzymes [BR:
ssz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCc_686 (uvrD)
DNA repair and recombination proteins [BR:
ssz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCc_686 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SCc_686 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
DUF4391
Motif
Other DBs
NCBI-ProteinID:
AEW44808
LinkDB
All DBs
Position
1546643..1548820
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AA seq
725 aa
AA seq
DB search
MVHMDISNLFDNLNDKQQAAVTAPRCHLLVLAGAGSGKTRMLVHRIAWLLSVENCSPCSI
MAVTFTNKAATEMRYRIKKLIGTSQNGMWVGTFHGLAHRLLRTHYMEANLPHDFQILDTD
DQLRLLKRIINTLNVCEQKWPLHQVIWYINNKKDEGLRPQHIKTYNDPVEGTWLRIYQAY
HETCERAGLVDFAELLLKAYELWLNKPDILHYYRKRFTNVLIDEFQDTNSIQYAWIRLLA
SDSNNNVMIVGDDDQSIYGWRGSQVENIQYFLKDFPNATTMRLEQNYRSSGNIIEAANTL
ISHNDGRMGKKLWTNKGQGAPIVIYRALNELKEALFVINCIKKWHANNGALKDCAILYRS
NAQSRLLEEALLSAAIPYHIYGGQRFFERQEIKDALAYLRLILNRNDDAAFERVVNTPTR
DIGRHTLNLVRQAARERQITLWQATKELLYEKVMPNRAAYALQCFTELVDSLAYATTNMP
LHIQTDLIIQRSGLFTMYQQGKGEKSQVRVENLAELVTATRQYKCQEEDHNLSPLQAFLS
HVMLEIGEVKNDHSKDTVQLMTLHSAKGLEFPIVFIIGMEEGIFPSQMSLEKKGRLEEER
RLAYVGVTRAMEKLTLTYAETRRLYGKTVYHQPSRFINELPRHCITEIQPCNNVLQPITY
SQMRIQRNNKKDTGYKLGQHVRHPKFGTGTIISLEGDNEHLRLQVSFYREGVKWLVAAYA
RLENI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggtccatatggatatatctaatctttttgataacctaaatgataaacaacaggcagct
gtaacagcgccacgttgtcacctattagttttagccggagcaggcagtggtaaaactagg
atgctagtacatcgtattgcctggctattatcggtagagaattgctctccatgctcaatt
atggcggttacctttaccaataaagcagcaacggaaatgcgttatcgtattaaaaaattg
ataggtactagtcagaacggtatgtgggttggaaccttccatggactagcacatcgttta
ttacgcacacattatatggaggctaatctgccacatgacttccaaatactagatactgat
gatcaactgcgactacttaaacgtattatcaacacattaaatgtatgcgagcaaaaatgg
ccgctacaccaagtaatatggtatattaataacaagaaagatgaaggtttacgcccacaa
cacattaaaacttataatgatccagtagaagggacttggttacgtatctatcaagcttat
cacgaaacttgcgaacgagctggactagtagattttgctgaattactgctaaaagcctat
gagctttggctaaataaaccagatatacttcactattatcgcaaacgcttcactaatgtg
cttatagatgaattccaagatactaacagtattcagtatgcctggatccgcctgctagca
agcgatagtaataataatgttatgatcgttggtgatgatgaccaatcgatatatggttgg
cgcggatcacaagtagaaaatatccagtatttcttaaaagacttccctaacgcaacaact
atgcgcctagaacagaactatcgatctagcggcaatatcattgaagcagctaatactctt
atttcccataacgacggacgcatgggtaaaaaactatggaccaataaaggtcaaggcgca
cctattgtaatataccgtgcacttaatgaacttaaagaggctctctttgtcatcaactgt
attaaaaaatggcatgcaaataatggtgcgctgaaagattgtgcgatactttaccgtagc
aatgcacaatcacgtttactagaggaagcattattaagtgctgctataccgtatcatatt
tacggtggtcaacgattttttgagcgccaagaaattaaagatgcattagcttatctacgc
ctaatactaaaccgaaatgatgacgcagcctttgagcgagtagtgaataccccaacacgc
gacataggtagacatactcttaacctagtgcgtcaagcagcacgtgagcgccaaataaca
ctatggcaagcgacgaaagaactgctatacgaaaaagttatgcctaatagagctgcttat
gcgctgcaatgctttactgaattagtagattcactagcttacgctacaaccaatatgcca
ctacatattcagaccgatctaattattcagcgctctggactatttaccatgtatcaacaa
gggaaaggtgaaaaaagtcaggtacgtgttgaaaatctcgcagaactagtgacagcaaca
cgtcaatataagtgtcaggaagaagatcataatctcagccccctacaagcatttttatcg
catgttatgctagagattggagaggttaaaaatgatcactctaaagacactgtacagtta
atgaccttacattcagctaaaggactagagttcccaatagtatttattatcggcatggaa
gaaggtatattcccaagtcaaatgtctctagaaaaaaaaggcaggctggaggaagagcgt
cgtctagcctacgttggtgtaactcgtgcaatggaaaaactaacactaacctatgctgaa
acacgacgcctatacggtaaaaccgtatatcatcaaccttcacgctttatcaatgagtta
ccaaggcattgtataacagaaatacaaccatgtaataatgtattacaacctataacatac
agtcaaatgagaatacaacgtaataataaaaaagatactggatacaagttaggccaacac
gtacggcatcctaaatttggcacaggcactatcatcagtctagaaggggataacgaacac
ttgcgattgcaagtctccttctatagagaaggtgttaaatggctagtcgcagcatatgca
cgattagagaatatataa
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