Serratia symbiotica: SCc_705
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Entry
SCc_705 CDS
T01672
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
ssz
Serratia symbiotica
Pathway
ssz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCc_705 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssz03021
]
SCc_705 (rho)
03019 Messenger RNA biogenesis [BR:
ssz03019
]
SCc_705 (rho)
Transcription machinery [BR:
ssz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCc_705 (rho)
Messenger RNA biogenesis [BR:
ssz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCc_705 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AEW44814
LinkDB
All DBs
Position
complement(1589407..1590666)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENIGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLSTAEELQKMWILRKIIHPMSEIDAMEFLMNKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtgtctgatctgattactctcggcgaaaat
atagggctagaaaatcttgcccgcctgcgtaagcaggacattatcttctctattctgaaa
caacatgcaaaaagtggagaagatatctttggtgatggtgtattagagatattgcaggat
ggatttggttttctccgttctggggatagttcttacctcgccggtcctgatgatatctat
gtatctcctagccaaattcgtcgtttcaatctccgcacaggtgataccatttccggtaaa
attaggccgccaaaagatggtgagcgctattttgctcttttgaaagttaacgaggttaac
tatgataaaccggaaaacgcccgtagcaagattctgttcgaaaacttaaccccattacat
gctaattcacgtttacgaatggagcgaggtaatgggtctactgaggacttaacagcacgt
gtactggatctagcctcgccaattggccgtggtcagcgtggcttgattgtcgcgccccca
aaagctggtaaaactatgttgttgcaaaatattgcgcaaagtattgcttataatcaccca
gattgtgtactaatggttctactgatcgatgagcgtccagaagaggtgactgagatgcag
cgtttagtcaagggtgaagtaattgcttcaacatttgatgagccagcatctcgtcatgtg
caggtagcagaaatggttattgagaaagctaagcgattggtagaacataagaaagacgtg
ataatcttacttgattctattacgcgtttagcgcgcgcctataacaccgtagttcctgct
tcaggcaaggtattaactgggggagtagatgctaatgccttacatcgtcctaagcgtttt
tttggcgctgctcgtaacgtcgaagaaggtggtagcctaactatcatagcgacagccctt
gttgataccggttcgaagatggatgaagttatttatgaagaatttaaaggtactggcaac
atggaattgcacttagcacgtaaaattgctgagaagcgtgtgtttcctgcaatcgattat
aatcgttctggtacgcgtaaagaagagttgctttctactgccgaagaattacaaaaaatg
tggatattgcgtaaaattattcatcccatgagtgagattgacgcaatggagtttcttatg
aataaattggccatgactaaaactaatgatgattttttcgatatgatgaaacgttcataa
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