Spirochaeta thermophila DSM 6192: STHERM_c04910
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Entry
STHERM_c04910 CDS
T01315
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sta
Spirochaeta thermophila DSM 6192
Pathway
sta03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sta00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STHERM_c04910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sta03021
]
STHERM_c04910
03400 DNA repair and recombination proteins [BR:
sta03400
]
STHERM_c04910
Enzymes [BR:
sta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STHERM_c04910
Transcription machinery [BR:
sta03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STHERM_c04910
DNA repair and recombination proteins [BR:
sta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STHERM_c04910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
RnfC_N
MCM_C
Motif
Other DBs
NCBI-ProteinID:
ADN01460
UniProt:
E0RQ76
LinkDB
All DBs
Position
582762..586970
Genome browser
AA seq
1402 aa
AA seq
DB search
MKNMQEFAAIRIMLASPELIRARSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWEC
YCGKFKSIRYKGVVCDRCGVEVTHFKVRRERMGHIELAAPVSHIWFYRSVPSRMGLLLDL
SVSALRSVLYYEQYIVIDPGDTDLKKMELLTEEEYLEARERYGMSFTAGIGAEAIRTLLK
NLDLDALAAELRAKMLEKGPKADKRLLKRLELVEQFRDSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLMALNAPDIIIRNEKRMLQEAVDALFDNSK
KRRAVKGASNRPLKSLSDILRGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQCGLPVK
MALELFKPFIMRKLVEREVVYNIKRAKTLVEQEADEVWAVLDEVIQEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTQAAQTECWTLMLSSRNLL
NPANGKPIVFPSQDMVLGIYYLTQVKKGAKGEGRYFASEDELVYAAECGAVDYHALVKVR
VSKAPHNGAFVETSAGRVIFNQALPPELEFVNQVFTDKELRQFVGRVYQEKGRGVAVRLL
DAMKEIGFKYATLSGTTFSLADVVVPEDKKAMIEEANQKVAAIQEQYLSGHITNEERYNR
VIEVWSKTNEDLTNVMMKVLREDRDGFNPLYMMAHSGARGSRSQIRQLAAMRGLMAKPSG
EIIELPIRANFKEGLSVIEYFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEE
DCGTINGIEMRALKDGEEIVENLADRIKGRFTIERVKHPITGEIIVDVDQEITDEKAREI
EEAGIEAVRVRSVLTCEARHGVCQKCYGRNLATNRLVEIGEAVGIVAAQSIGQPGTQLTM
RTFHIGGTATRVVEENRVYLKYPVLVESLEGNVVELETGIRLFTRRGKVKARRILETHAL
DEKDEVLVEDDQKVMTGQPLLRRASGEEIFSGHNAIVRLKGDRLLLVAQEQSVEIRNGSE
IFVHPGDVLDAGETIAVFDPFSEPIIAEQSGVVKYHDMVLGTTLREEVNEDTGKIEKKIT
EHQLERLQPRIVIEDDEGNELGVYYLPGGAYVNVEDGERITAGRTLARMLRESVRTMDIT
GGLPRVGELFEARKAKNAAVLAQVSGTVHFHGIVKGKRVIVVEDEFGREYKHLIPMGRHL
LVREGDHVEAGEKLCEGPVSPHEVLRILGENALQAFLLNEIQEVYRLQGVEINDKHIAII
IRQMMKKVEIVEVGDTKFIYGQQVDRREFFEENERVRRQGGQPAVARPLLLGITKASLSI
DSFIAAASFQETTRVLTNAAIAGSVDYLRGLKENVIIGHLIPAGTGVQRYREIKLYDEHK
QDLDLKVRELLEARSQEETLEI
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacatgcaggagtttgctgcaatcaggataatgctcgcttccccggaactcatc
agggctcgcagttacggggaggtgaagaagccggagaccatcaactaccgcaccctcagg
ccggagcgcgacggtcttttctgtgagcggatcttcggtaccaccaaggagtgggagtgt
tactgtgggaagttcaagtccatccgatacaagggggtggtctgtgaccggtgcggcgtc
gaggtgacccacttcaaggtgaggagggagcggatggggcatatcgagctcgccgcccct
gtctcccacatatggttctaccgctccgtgccctcccgcatggggctcctcctcgacctg
agtgtctcggccctccggtcggtgctctactacgagcagtacatcgtgatcgatccgggt
gacacggatctcaagaagatggagctcctcaccgaggaggagtacctcgaggcccgcgag
cggtacggcatgtcgttcaccgcggggataggggccgaggcgatccggaccctcctcaag
aacctggatctggacgccctcgccgcggagctccgggccaagatgttggagaaggggccc
aaggcggacaagcgtctcctcaagcggctcgagctcgtggagcagttcagggactcgggc
aacaggcctgagtggatgatcctcgacgtgatcccggtgatcccgcccgagctcaggccc
atggtacagctcgacggcgggaggttcgccacctcggatctcaacgacctctaccggagg
gtcatcaaccgcaacaacaggctcaagcggctcatggccctcaatgcccctgacatcatc
atccggaacgagaagcgcatgctccaggaggcggtggacgccctcttcgacaactccaag
aagcgacgggcggtgaaaggcgcctccaaccgccccctcaagtcgctctcggacatcctc
aggggcaagcaggggcgattccgccagaacctgctcgggaaacgcgtcgactactccgga
cggtcggtcatcgtggtgggacccgagctcaagatgcaccagtgcgggctgccagtgaag
atggccctcgagctcttcaagcccttcatcatgcgcaagctcgtggagcgagaggtggtc
tacaacatcaagcgggccaagaccctcgtggagcaggaggccgacgaggtctgggccgtg
ctcgacgaggtgatccaggagcaccccgtgctcctcaaccgggcgcccaccctccaccga
ctggggatccaggccttcgagccggtgctcgtggaggggaaggcgatcaagctccatccc
ctcgtgtgtcacgcctacaacgcggacttcgacggcgaccagatggcggtgcacgtgccg
ctcacccaggccgcccagaccgagtgctggaccctcatgctctcctcgcggaacctcctc
aatcccgcgaacggtaaacccatcgtcttcccttcacaggacatggtcctcggcatctac
tacctcacccaggtgaagaagggggcgaagggcgaggggcggtacttcgcctcggaggac
gagctcgtgtacgcggccgagtgcggggcggtggactaccacgccctggtgaaggtgcgc
gtctccaaggccccccacaacggtgcgttcgtggagaccagcgcgggccgggtgatcttc
aaccaggccctcccgcccgagttggagttcgtgaaccaggtgttcaccgacaaggagctc
aggcagttcgtggggcgcgtgtaccaggagaagggacggggggttgccgtccgtctcctc
gatgcgatgaaggagatcggcttcaagtatgcgaccctctccggtaccaccttctcgctg
gccgatgtggtggttcccgaggacaagaaggcgatgatagaggaggcgaaccagaaggtc
gccgccatccaggagcagtacctctcagggcacatcacgaacgaggaacgatacaaccgc
gtgatcgaggtgtggagcaagacgaacgaagacctcaccaacgtgatgatgaaggtcctc
agggaggatcgcgatgggttcaacccgctctacatgatggcccactcgggggcccgtgga
agccggagccagatcaggcagcttgcggcgatgcgcggtctcatggcgaaaccgtcggga
gagatcatcgagctgcccatcagggcgaacttcaaggaagggctctcggtgatcgagtac
ttcatctccacgaacggtgcgcgtaaggggctcgccgacacggccctcaagaccgcggac
gccggctatctcacgagacggctcgtggatatcgcccaggacgtggtggtgaacgaagag
gactgcggtaccatcaacgggatcgagatgcgcgccctcaaggacggtgaggagatcgtg
gagaacctggccgacaggatcaagggacggttcaccatcgaacgggtgaagcatcccatc
accggcgagatcatcgtggacgtggaccaggagatcaccgacgagaaggcgcgtgagatc
gaggaggccggtatagaggcggtgcgggtgcggagcgtgctcacctgtgaggcacggcac
ggtgtgtgtcagaagtgttacggccgtaacctggcgaccaaccgcctcgtggagataggg
gaagcggtgggcatcgtcgctgcgcagtcgatcggccagccgggtacccagctcaccatg
cgtaccttccacatcgggggtactgccaccagggtggtggaggagaaccgcgtgtatctc
aagtacccggtgctcgtggaatcgctggagggcaatgtcgtggagctggagacgggtata
cgcctcttcacccgtcgcgggaaagtgaaggcccggaggatcctcgagacgcacgccctc
gacgagaaggacgaggtgctcgtagaggatgatcagaaggtgatgacggggcagcccctc
ctcaggcgtgcatcgggtgaggagatcttctccggccacaacgccatcgtccgcctgaag
ggggacaggctcctcctcgtggcccaggaacagtcggtggagatcagaaacggatcggag
atcttcgtccatccgggcgacgtgctcgatgcgggagagaccatcgcggtcttcgacccc
ttcagtgagcccatcatcgcggaacagagcggtgtggtgaagtaccacgacatggtactg
ggcacgaccctccgggaggaggtgaacgaggataccgggaagatagagaagaagatcacc
gagcaccagctcgaacgtctccagcccaggatcgtgatagaggacgacgagggcaacgag
ctcggcgtgtactacctcccgggcggtgcctatgtgaacgtggaagacggggagcgcatc
accgctggtcgtaccctcgcgcggatgctcagggagagcgtccgaaccatggacatcacc
ggtggtctgccccgggtgggtgagctcttcgaggcccgcaaggccaagaacgccgcggtc
ctcgcccaggtgagcggcacggtgcacttccatggtatcgtgaagggcaagcgggtgatc
gtggtggaggacgagttcggtcgggaatacaagcacctcatccccatgggacgccacctc
ctcgtccgggaaggcgaccacgtggaggcgggcgagaaactctgtgagggccccgtgagc
ccccacgaggtcctccggattctgggagaaaacgcgcttcaggcattcctcctcaacgag
atacaggaggtgtaccggctccagggggtggagatcaacgacaagcacatcgccatcatc
atcaggcagatgatgaagaaggtggagatcgtcgaggtgggagacaccaagttcatctac
ggccaacaggtcgacagacgggagttcttcgaggagaacgagcgtgtgcgacggcagggc
ggacaacccgccgtggctcggcctctgctcctcggtatcaccaaggcttccctcagcatc
gattccttcatcgctgcggcctccttccaggagaccaccagggtgctcaccaatgccgcg
atcgcaggatcggtggactacctgcgagggctcaaggagaacgtgatcatcggtcacctc
atccctgccgggacgggggtccagcggtatcgagagatcaagctctacgacgaacacaag
caggatctcgacctcaaggtgagggagctgctcgaggcgcgatcccaggaggagaccctc
gagatctag
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integrated database retrieval system
