Spirochaeta thermophila DSM 6192: STHERM_c06530
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Entry
STHERM_c06530 CDS
T01315
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sta
Spirochaeta thermophila DSM 6192
Pathway
sta03410
Base excision repair
sta03430
Mismatch repair
sta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STHERM_c06530
03430 Mismatch repair
STHERM_c06530
03440 Homologous recombination
STHERM_c06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sta03400
]
STHERM_c06530
DNA repair and recombination proteins [BR:
sta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
STHERM_c06530
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
STHERM_c06530
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STHERM_c06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADN01612
UniProt:
E0RR34
LinkDB
All DBs
Position
733427..735556
Genome browser
AA seq
709 aa
AA seq
DB search
MARWQKPPIDKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLHNPFLFE
DMPLAVERVIQAKEEGERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPMGDEQYGL
SLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAIIDP
KVEGSGYPFRDLAGCGVVAKFLWALTFGLSDHFNQEVSLLNIRPGNEAYIVEVIQTENLI
ELDRVQESIVPGMVPVDRTRIYDLIAQSPIYVYDLPLQQRLFQAAFGRGVELQAFDLKPL
VERLYPSLKGRSLLRLKDRSRGALYREKPPEEIDVLFSLFQAVLMEETGVLRSMERVMDL
VGLGTLADLMPLRNENRILVREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGP
IINASGRMGSPDVAVRLLLCRDPAEAEALGDELIKLNDERKRLGEDLWQRIQPQAYESFT
RFKEKFVLVYHDAVQRGVTGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQGVGVLN
LLTACEDLLMEYGGHDFAAGFSLHPERLEEFIERLVEVVEDLGLPLRGEEPLTIDAEIPP
SWMTPDIMKVVEFFAPYGEQNPPLRLLYREAVVRDIQFIGRNGQPHIKFHLAMGGALWPA
VYWGASDKVNVEFSEDDEVDVVFTPTWNTYQNQETIQLTVVDMRRCEGS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgctggcagaaaccgcctattgacaagaacagggtgctcggaatctccgagcgg
ttcggactcgaccttctcacctccaccatcctggtgaggagggggctcgactcacccgag
gaactctccttcttcatggaacgacacctccgataccttcacaacccgttcctgttcgaa
gatatgccccttgctgtggaacgagtgatccaggcgaaggaggagggggaacgtatactc
gtcttcggggacagggatgcggacgggatcagctccaccgtgctcctcacggagttcctc
gaggagatgggtatggaggtggactggcgggtgcccatgggcgacgaacagtacggcctc
tccctcgatgcagtggaggaacacgcccggaacgggggatcgctcatcatcaccgtggac
tgcggtatctccagtgtgcgtgagatcacgagagccgccgagctcggtctcgacgtcatc
gtcctcgaccaccacgaacccaaggaggaactccctcccgcctacgccatcatcgatccc
aaggtcgagggatccgggtacccgttccgcgacctggccggatgcggcgtggtggcgaag
ttcctctgggccctcaccttcggtctctccgaccacttcaaccaggaggtgagcctcctc
aatatacggccgggcaacgaggcctacatcgtggaggtgatacagaccgagaacctcata
gagctcgacagggtgcaggaatcgatcgtaccgggcatggtcccggtggaccgcaccaga
atctacgatctcatcgcccagtcgcccatctatgtgtacgatctgccgctccagcagcgg
cttttccaggctgcgttcggcagaggagtggaactccaggccttcgacctcaagccgctg
gtggaacgcctctacccctcgttgaagggcaggagcctcctcaggttgaaggacagatcc
cggggcgccctctacagggagaagcctcccgaggagatcgacgtgctcttctccctcttt
caggccgtactcatggaggagaccggggtgctccgctccatggaacgggtgatggacctg
gtggggttggggacgctcgccgatctcatgcccctcaggaacgagaaccgaatcttggtg
agggaggggctcgtccggctctccgatccggagcggcctgggctcagggccctcatggca
cgtcagaaactcctgggcaagaagctcgctccccgtgacgtgctctggcaggtggggcct
atcatcaacgcctcggggcggatgggatctccggacgtggcggtgcgtctcctcctctgc
cgggaccctgccgaggcggaggccctgggcgatgagctcatcaagctcaacgacgagcgg
aagcggctcggggaggacctgtggcagaggatacagccccaggcctacgagagtttcacc
cggttcaaagagaagttcgtgctcgtgtatcacgatgcggtccagcggggcgtcaccggg
atcctcgcggcccggctcgcccagaagttcaaggtacccgccgccattctggcccccctc
gaagaagaggggaggctcgtggggtccttgagaagcttccagggagtgggggtgctcaat
cttctcacggcgtgcgaagatctcctcatggagtatggcggtcacgacttcgccgcagga
ttctccctgcaccccgaacgcctggaggaattcatcgagcgactcgtcgaggtggtggag
gacctgggtcttccgcttcgcggtgaggagcctctcaccatcgacgccgagataccgccc
tcatggatgacgcccgatatcatgaaggtggtggagttcttcgccccgtacggggagcag
aatccccccctcaggttgctctaccgggaggccgtggtccgtgacatccagttcatcggc
cgcaacgggcaaccgcacatcaagttccacctcgccatgggaggtgccctctggcctgcc
gtgtattggggggcgtcggacaaggtgaacgtggagttttccgaggacgacgaggtggat
gtggtattcacccctacgtggaacacctatcagaaccaggagaccatccagctcacggtc
gtggacatgaggcgatgcgaaggatcctga
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integrated database retrieval system
