Streptomyces tanashiensis: LDH80_07365
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Entry
LDH80_07365 CDS
T08718
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
staa
Streptomyces tanashiensis
Pathway
staa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDH80_07365 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staa03019
]
LDH80_07365 (recQ)
03400 DNA repair and recombination proteins [BR:
staa03400
]
LDH80_07365 (recQ)
Enzymes [BR:
staa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDH80_07365 (recQ)
Messenger RNA biogenesis [BR:
staa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDH80_07365 (recQ)
DNA repair and recombination proteins [BR:
staa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LDH80_07365 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZX20541
LinkDB
All DBs
Position
complement(1651988..1654018)
Genome browser
AA seq
676 aa
AA seq
DB search
MVLSDAPDTSDEISGTSDEISDAARVLHRVFGYSSFRGEQQEIIEQVVGGGDALVLMPTG
GGKSLCYQIPALVRAGTGVVISPLIALMQDQVDALRALGVRAGFLNSTQDPYERQAVEQA
FLADELDLLYLAPERLRTEGTQRLLDRGTVSLFAIDEAHCVAQWGHDFRPDYLALSMLHE
RWPKVPRIALTATATEATHAEIAKRLGLEEARHFVAGFDRPNIQYRIVPKNNPVKQLLEL
IRTEHDGDAGVVYCLSRASVEKTAALLVEQGIDAVPYHAGMDARTRAANQARFLREDGVV
VVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGEPATAWLAYGLQDVVQQR
KMIDGSEGDETHRRSLAMHLDAMLALCETVDCRRVRLLEYFGQTGEPCGNCDTCLTPGES
WDGTVAAQKLLSTVWRLAKERRQKFGAGQIIDILQGKRTAKVIQFDHDGLSVFGVGSDLG
TAEWRGVVRQLLAQRLLAVEGDYGTLVLTEDSGEVLGGRRQVPMRKEKAAPAATRKESGA
RSGKGARVPVDLPAAAVPVFEALRAWRAATAREQGVPAYVVFHDATLREIATHLPATVQE
LGTIGGVGEAKLTKYAQGVLDTLAEAGGAGASAPPAPAAPAAAPPARGAEPHAPPSYDEE
PPFDMDELEPPWDEDE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtcctttccgacgctcccgacacctccgacgagatctccggcacctctgacgagatc
tccgacgccgcccgggtgctccaccgcgtcttcggctacagctccttccgcggggagcag
caggagatcatcgagcaggtcgtcggcggcggcgacgcgctcgtcctgatgccgacgggc
ggcggcaagtcgctctgctaccagatcccggccctggtcagagcgggcacgggcgtcgtg
atctcgccgctgatcgccctgatgcaggaccaggtggacgcgctcagagcgctcggggtg
cgggccggcttcctgaactccacgcaggacccgtacgagcggcaggccgtcgagcaggcc
ttcctcgcggacgagctggacctgctctacctggcccccgagcggctccgcaccgagggc
acccagcggctgctcgaccggggcacggtgtcgctcttcgcgatcgacgaggcgcactgc
gtcgcccagtggggccacgacttccggcccgactacctcgccctctcgatgctgcacgag
cggtggccgaaggtgccgaggatcgcgctgacggcgacggccaccgaggccacccacgcc
gagatcgcgaagcggctcggcctggaggaggcccggcacttcgtcgccggcttcgaccgg
ccgaacatccagtaccgcatcgtccccaagaacaacccggtcaagcagctcctggagctg
atcaggaccgagcacgacggggacgcgggcgtcgtctactgcctgtcgcgcgcctcggtg
gagaagacggcggccctcctcgtcgagcagggcatcgacgccgtcccgtaccacgcgggc
atggacgcccggacccgcgccgccaaccaggcccgcttcctgcgcgaggacggggtcgtc
gtggtggcgaccatcgccttcggcatgggcatcgacaagccggacgtccgcttcgtggcc
cacctcgacctgcccaagtcggtcgagggctactaccaggagaccggccgcgccggccgc
gacggggagccggccacggcctggctggcgtacggcctccaggacgtcgtccagcagcgc
aagatgatcgacggctccgagggcgacgagacgcaccgccgctccctggccatgcacctg
gacgcgatgctcgccctctgcgagacggtcgactgccgccgcgtgcgcctcctggagtac
ttcggacagaccggcgagccgtgcggcaactgcgacacctgcctgacgccgggcgagtcc
tgggacgggaccgtcgccgcgcagaagctgctgtccacggtgtggcggctggccaaggaa
cggcgccagaagttcggcgcgggccagatcatcgacatcctccagggcaagaggaccgcc
aaggtcatccagttcgaccacgacgggctctcggtcttcggcgtcggctcggacctcggc
accgccgagtggcgcggggtcgtccgccagctcctcgcgcagcggctgctcgcggtggag
ggcgactacgggacgctcgtgctcacggaggacagcggcgaggtgctgggaggacgccgc
caggtcccgatgcgcaaggagaaggcggcccccgcggccacccgcaaggagtccggggcc
cgctccggcaagggtgcccgcgtgcccgtcgacctgcccgcggccgccgtgcccgtcttc
gaggccctccgcgcctggcgggccgcgacggcgcgcgagcagggcgtgccggcgtacgtc
gtcttccacgacgcgacgctccgcgagatcgcgacccacctgcccgccaccgtccaggaa
ctcggcaccatcggcggcgtcggtgaggccaagctcaccaagtacgcccagggcgtgctc
gacaccttggccgaggccggcggtgccggggcgagcgctccacccgcacccgccgctccg
gctgcggcgcccccggcgcggggcgcggagccgcacgccccgccgtcctacgacgaggag
ccgccgttcgacatggacgagctcgaaccgccgtgggacgaggacgagtag
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