Streptomyces tanashiensis: LDH80_10125
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Entry
LDH80_10125 CDS
T08718
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
staa
Streptomyces tanashiensis
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
staa03016
]
LDH80_10125
Enzymes [BR:
staa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LDH80_10125
Transfer RNA biogenesis [BR:
staa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LDH80_10125
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UZX21050
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Position
2239307..2240590
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AA seq
427 aa
AA seq
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MTDAQETAADTALRTTGGGPPDDDVPANGLPIPLLEPREGIPPVVETEDALAEVIAAFAA
GSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVGCPDLSGLGEALAGTEWILHA
ATQDLPCLRDIGMLPTSLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVDWSTRP
LPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAHQEFDAIASAPPAPPRKDPWRRTS
GMHKVRRRRQMAVVRELWTARDKVAQRRDVSPGKVLSDAAIVEAALSVPVNVAALTALPG
FGNRMGRRQLEQWQAAVDRARALPESELPQPGQQVAGPPPPRAWADKDPVAAARLSAARA
AVSALAEELNLPQENLITPDTVRRVCWEPPSPGTPDTVAAALTGHGARPWQVELVTPLLV
EALTAKV
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagacacagcactgcgcaccaccgggggcggcccc
ccggacgacgatgtccctgcgaatgggcttccgatcccgttgctggagccccgcgagggg
attccacccgtcgtggagaccgaggacgccctcgccgaggtgatcgccgcgttcgccgcc
ggaagcggccccgtggccgtggacgccgagcgcgcctccggctaccgctacggccagcgc
gcctatctcgtccagctccgccgcgagggcgcgggcaccgcgctcatcgaccccgtcggc
tgccccgacctctcggggctcggcgaggcgctcgccgggacggagtggatcctgcacgcc
gcgacccaggacctcccgtgtctgcgtgacataggcatgctccccacctcgctcttcgac
accgagctcgccgggcgtctcgcgggcttcccgcgcgtcggactcggcgcgatggtcgag
tccgtcctcggctacgccctggagaaggggcactccgccgtcgactggtccacccgcccg
ctgcccgagccgtggctccggtacgcggccctggacgtcgagctgctcgtcgacctgcgg
gacgccctggagaaggagctcgaccggcaggggaagctggagtgggcccaccaggagttc
gacgcgatcgcctcggccccgcccgccccgccgcgcaaggacccgtggcgccggacctcc
ggcatgcacaaggtgcgccgccggcgtcagatggcggtcgtccgggagctgtggacggcc
cgtgacaaggtcgcccagcggcgtgacgtctcccccggcaaggtgctcagcgacgcggcg
atcgtggaggcggcgctctcggtgccggtgaacgtggccgcgctcaccgcgctgcccggt
ttcggcaaccggatgggccgccgtcagctggagcagtggcaggccgcggtggaccgggcc
agggccctccccgagagcgagctgccccagccgggccagcaggtcgcgggtccgcccccg
ccgcgcgcctgggcggacaaggacccggtcgcggcggcccgcctctcggcggcgcgcgcg
gcggtctcggcgctcgcggaggagctgaaccttccgcaggagaacctgatcacgcccgac
accgtccgccgggtgtgctgggagccgccgtcgccgggcaccccggacacggtcgcggcc
gccctgacgggccacggcgcccggccgtggcaggtggagctggtgaccccgctgctcgtg
gaggcgctgacggcgaaggtgtga
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