Streptomyces tanashiensis: LDH80_13475
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Entry
LDH80_13475 CDS
T08718
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
staa
Streptomyces tanashiensis
Pathway
staa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDH80_13475 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
staa03021
]
LDH80_13475 (rho)
03019 Messenger RNA biogenesis [BR:
staa03019
]
LDH80_13475 (rho)
Transcription machinery [BR:
staa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LDH80_13475 (rho)
Messenger RNA biogenesis [BR:
staa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LDH80_13475 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
VAD1-2
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZX21667
UniProt:
A0ABY6QWI7
LinkDB
All DBs
Position
complement(3060410..3062473)
Genome browser
AA seq
687 aa
AA seq
DB search
MADVRSREGPFVSDTTDLMGVTADNSVDTAAPAAGATGTARRRRSGTGLEGMVLAELQQV
ASGLGIRGTARMRKSQLIEVIKEAQAGGGSAAPAKTADAADAKPKRRATSKARTAETAEA
AAPKAEKAEKAVAQQQIDIPGQPAADDAPAGERRRRRATAPAGSPEGEAKAEAAQVVKTE
ARTETREVKAEPQGDAKAEDGAEGRGRRDRGERGERGDRRDRRDRQRDRKGDEQQGGGQG
GQRQRQGGQGQGGQGQQGGQQGGQQAGPQDDYDDEAGGRRGRRGRYRDRRGRRGRDDFQA
GEPQVADDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGA
VRQPKEGERREKFNALVRLDSANGMAADSGRGRPEFNKLTPLYPQDRLRLETDPGVLTTR
IIDLVSPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQ
RSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPA
SGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGN
MELKLDRKLADKRIFPAVDVDASGTRKEEILLGSDELAVTWKLRRVLHALDQQQAIELLL
DKMKQTKSNGEFLLQIQKTTPGAGNND
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtccgctccagggaaggacccttcgtgagcgacaccaccgatctgatgggc
gtgactgccgacaacagtgtcgacaccgccgcgcccgccgcaggtgccaccggcaccgca
cggcgccgccgctccggcaccggcctcgagggcatggtcctggccgagctgcagcaggtc
gcgtccggcctcggcatcaggggcaccgcgcggatgcgcaagagccagctgatcgaggtc
atcaaggaggcgcaggccggtggcggctccgccgcccccgccaagaccgccgacgccgcc
gacgccaagccgaagcgccgcgccacctccaaggcccgcacggccgagaccgccgaggcc
gccgcgcccaaggcggagaaggccgagaaggccgtcgcccagcagcagatcgacatcccg
ggccagccggccgccgatgacgccccggccggtgagcgccgccgccgtcgcgccaccgcc
cccgccggttcgccggagggcgaggccaaggccgaggccgcccaggtcgtcaagaccgag
gcccgtaccgagacccgtgaggtcaaggccgagccgcagggcgacgccaaggccgaggac
ggcgccgagggccgtggccgccgtgaccgcggcgagcgcggggagcgcggcgaccgccgt
gaccgccgtgaccgccagcgcgaccgcaagggcgacgagcagcagggcggtggccagggc
ggccagcgtcagcgccagggtggccagggccagggcggccagggccagcagggcggacag
cagggtggccagcaggccggtccgcaggacgactacgacgacgaggcgggcggccgtcgc
ggccgtcgcgggcgctaccgcgaccgccgcggccgtcgtggccgtgacgacttccaggcc
ggcgagccgcaggtcgcggacgacgacgtcctgatccccgtcgcgggcatcctcgacatc
ctcgacaactacgcgttcatccggacctccggctacctgcccggtccgaacgacgtgtac
gtctccctcgcccaggtccgcaagaacggcctgcgcaagggtgaccacgtcaccggcgcc
gtgcgtcagccgaaggagggcgagcgccgcgagaagttcaacgcgctggtccgcctggac
tccgcgaacggcatggccgccgactccggccgcggccgcccggagttcaacaagctgacg
ccgctgtacccgcaggaccgcctccgcctggagacggacccgggcgtgctgaccacccgc
atcatcgacctcgtgtcgccgatcggtaagggccagcgcggtctgatcgtggccccgccg
aagaccggcaagaccatgatcatgcaggcgatcgccaacgcgatcacgcacaacaacccc
gagtgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcag
cggtcggtcaagggcgaggtcatctcctcgaccttcgaccgtccggccgaggaccacacc
accgtcgccgagctggccatcgagcgcgccaagcgtctcgtggagctgggtcacgacgtg
gtcgtcctgctcgactcgatcacccgcctgggccgcgcgtacaacctcgcggcgccggcc
tccggccgcatcctgtccggtggtgtcgactcgaccgcgctctacccgccgaagcgcttc
ttcggtgccgcgcgcaacatcgaggacggcggctcgctgaccatcctcgcgaccgcgctc
gtcgacaccggctcccgcatggacgaggtgatcttcgaggagttcaagggcaccggcaac
atggagctcaagctcgaccggaagctcgccgacaagcgcatcttcccggccgtcgacgtc
gacgcctcgggtacgcgcaaggaggagatcctcctcggcagcgacgagctcgccgtcacc
tggaagctgcgtcgtgtgctccacgcgctcgaccagcagcaggcgatcgagctgctgctc
gacaagatgaagcagacgaagtcgaacggcgagttcctgctccagatccagaagaccacc
cctggagccggcaacaacgactga
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