Streptomyces tanashiensis: LDH80_19225
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Entry
LDH80_19225 CDS
T08718
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
staa
Streptomyces tanashiensis
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staa03019
]
LDH80_19225 (hrpA)
Enzymes [BR:
staa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LDH80_19225 (hrpA)
Messenger RNA biogenesis [BR:
staa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LDH80_19225 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
NACHT
T2SSE
AAA_16
nSTAND_NTPase5
SLFN-g3_helicase
PhoH
DUF6139
ResIII
AAA_25
NTPase_1
TsaE
Motif
Other DBs
NCBI-ProteinID:
UZX22730
UniProt:
A0ABY6QYB7
LinkDB
All DBs
Position
4268736..4272710
Genome browser
AA seq
1324 aa
AA seq
DB search
MSTSFAALQSVLAEVSLRDSHRLGRRLEGARRIRKPEARAAVLDEIAVEAAKAKERVDGR
ASRVPPVTYPEQLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDSEESDRDQITAICDAVDELQKEGPGDVLVFLSGERE
IRDTADALIKKKLFNTEILPLYARLSHAEQHRVFQAHSGRRVVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLTRPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAIDPTEKDP
KKRLTQQGRKLSQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPSEKQAQAD
QQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYSQLR
TVAKQMGIHLNEEDAPEQSVHVSLLSGLLSHVGLKDVKESKDGAKDGSRREGTRNEYLGA
RNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWIEPLAQHLVKKTYSEP
HWEKDQAAVMAFEKVTLYGVPIVADRKVNYGRIDPEVSRDLFIRNALVEGDWRTHHKFFA
DNRKLLTEVEELEHRARRRDILVDDETLFDFYDKRVPEHVVSGAHFDSWWKHKRHEEPEF
LDFEREMLINEKAGAVTKDDYPDSWRQGALKFRVTYQFEPGADADGVTVHVPLQVLNQVT
DEGFEWQIPGLRAEVVTELIRSLPKPIRRHYVPAPNFATRFLDSVVPVQEPLTGALAREL
QRMVGVPVTAEDFDWAKVPEHLKVTFRIVDERRRKLAEDKDLETLRLKLRPKARQALSKA
AAAVTGGPDGSGPSLERTGLKDWTIGTLTKVFETKRGGQPVKAFPALVDEGDSVAVRLFD
SEAEQAQAMWRGTRKLIMLNIPVNPAKFASDKLTNQQKLALSSNPHGSIQALFDDCATAA
ADKLIADHGGPAWDEESFRKLYDRVRADLVDTTVRTVGQVQQILAAWQACERRLKSTNSL
ALINNLTDVKAQLAWLMPAGFVTRTGLKRLPDLMRYLVAVDRRLQQMPTGVQRDTTRMEK
VQEMQDEYAWLLEQLPKGRPVPSEVTDIRWMIEELRVSYFAHALGTASPVSDKRIVKAID
AAAP
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctccagtccgtcctggccgaggtctcgctgcgggactcc
caccggctcggccgccgtctcgaaggcgcccgccgcatccgcaagcccgaggcccgcgcg
gccgtcctggacgagatcgccgtcgaggcggccaaggccaaggagcgcgtcgacgggcgc
gcctcccgcgtgcccccggtcacgtatcccgagcagctgcccgtctcgcagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagacgggctcc
ggaaagaccacccagatcccgaagatctgtctggagctgggccggggcgtccggggcatg
atcgggcacacccagccccgccggatcgccgcccgcaccgtcgccgagcgcgtcgcggag
gagctgcggacccccctcggggaggccgtcggctggaaggtccgcttcaccgaccaggtg
aaccccgacgcgaccttcgtgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctcggctatctggcccagctgctgccgaagcgccccgacctc
aaggtcgtgatcacctccgcgacgatcgacccggagcgcttctcccgccacttcggcgac
gccccgatcgtcgaggtcagcgggcgtacgtatccggtcgaggtccgctaccggccgctc
ctggaggaggactccgaggagtccgaccgggaccagatcaccgccatctgcgacgcggtc
gacgagctccagaaggagggtccgggcgacgtcctggtcttcctctccggcgagcgcgag
atccgcgacacggcggacgcgctgatcaagaagaaactcttcaacacggagatcctgccg
ctgtacgcccggctctcccacgccgagcagcaccgggtcttccaggcgcactccggccgc
cgggtcgtcctcgcgacgaacgtcgcggagacctcgctgaccgtccccggcatcaagtac
gtgatcgatccgggcaccgcccgcatctcccgctactcgcaccggaccaaggtgcagcgg
ctgccgatcgagcccgtcagccaggccagcgccaaccagcgcaagggccgctgcggccgt
acgagcgacggcatctgcatccgcctgtactccgaggacgacttcctcacccggcccgag
ttcacggacgccgagatcctccgtacgaacctggcctccgtcatcctgcagatgaccgcg
gccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccaccggaacatc
cgcgacggcgtgcagctcctccaggagctcggcgcgatcgacccgacggagaaggacccg
aagaagcggctgacgcagcagggccggaagctctcgcagctgcccgtggacccgcggctc
gcccggatggtcctggaggccgacaagaacggctgcgtccgcgaggtcatggtgatcgcg
gcggcgctctccatccaggacccgcgcgagcggccgtccgagaagcaggcgcaggccgac
cagcagcacgcccggttcaaggacgagacgagcgacttcctcgccttcctcaacctgtgg
cgctacgtccgcgagcagcagaaggagcgcggttccagctccttccgccggatgtgcaag
caggagtacctgaacttcctgcgcatccgcgagtggcaggacatctacagccagctgcgc
acggtcgccaagcagatgggcatccacctcaacgaggaggacgcgcccgagcagtccgtg
cacgtctccctcctctcgggcctgctctcccacgtcggcctgaaggacgtgaaggagtcc
aaggacggcgcgaaggacggctcccgccgcgagggcacccggaacgagtacctgggcgca
cggaacgccaagttcgcgatcttccccggctccgcgctgttcaagaagcccccgcgcttc
gtgatgtccgccgagctggtggagacctcgcggctctgggcccgggtcaacgcccggatc
gagcccgagtggatcgagccgctcgcgcagcacctggtgaagaagacgtacagcgagccg
cactgggagaaggaccaggcggccgtgatggccttcgagaaggtgacgctgtacggcgtg
ccgatcgtcgccgaccgcaaggtgaactacgggcggatcgacccggaggtctcccgcgac
ctgttcatccggaacgcgctcgtcgagggcgactggcgcacccaccacaagttcttcgcg
gacaaccgcaagctcctcaccgaggtcgaggagctggagcaccgggcccggcggcgggac
atcctcgtcgacgacgagacgctcttcgacttctacgacaagcgcgtccccgaacacgtc
gtgtccggagcccacttcgactcctggtggaagcacaagcgccacgaggagccggagttc
ctcgacttcgagcgcgagatgctcatcaacgagaaggccggggcggtcaccaaggacgac
tacccggactcctggcgccagggcgcgctgaagttccgggtgacgtaccagttcgagccg
ggcgcggacgcggacggcgtgaccgtccacgtgccgctccaggtgctcaaccaggtgacg
gacgagggcttcgagtggcagatccccggtctgcgcgcggaggtcgtcacggagctgatc
cgttccctgccgaagccgatccgccgtcactacgtcccggcaccgaacttcgcgacccgc
ttcctggactccgtggtccccgtccaggagccgctgacgggcgcgctcgcccgggagctc
cagcggatggtcggcgtcccggtcacggccgaggacttcgactgggcgaaggttcccgag
cacctcaaggtgaccttccggatcgtcgacgagcggcgccggaagctggccgaggacaag
gacctggagacgctgcggctgaagctgcgtcccaaggcccgtcaggcgctctccaaggcc
gccgcggcggtcacgggcggcccggacggctccgggccctccctggagcgcacgggcctc
aaggactggacgatcgggacgctcacgaaggtcttcgagaccaagcggggcggccagccg
gtcaaggcgttcccggcgctggtcgacgaaggcgactcggtggccgtgcggctcttcgac
tcggaggccgagcaggcgcaggcgatgtggcggggcacccggaagctgatcatgctgaac
attccggtgaacccggcgaagttcgcctcggacaagctgaccaaccagcagaagctggcc
ctgtcctcgaacccgcacggctcgatccaggccctcttcgacgactgcgccaccgccgcg
gccgacaagctgatcgcggaccacggcggcccggcctgggacgaggagtccttccgcaag
ctgtacgacagggtccgcgcggacctggtcgacaccacggtacggacggtgggccaggtc
cagcagatcctggcggcctggcaggcgtgcgagcgccggctgaagtcgacgaacagcctg
gccctgatcaacaacctgaccgacgtgaaggcgcagctcgcctggctgatgccggcgggc
ttcgtcacccgtacgggcctgaagcggctcccggacctgatgcgctatctggtggcggtg
gaccggcggctccagcagatgcccaccggggtccagcgggacaccacccggatggagaag
gtccaggagatgcaggacgagtacgcctggctgctcgaacagctccccaagggccgcccg
gtgccgtccgaggtcaccgacatccggtggatgatcgaggagctgcgggtgagctacttc
gcgcacgccctgggcaccgcgtccccggtctcggacaagcggatcgtgaaggcgatcgac
gcggcggccccctag
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