Streptomyces tanashiensis: LDH80_24265
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Entry
LDH80_24265 CDS
T08718
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
staa
Streptomyces tanashiensis
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
staa03021
]
LDH80_24265
Transcription machinery [BR:
staa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LDH80_24265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_Crp_2
HTH_23
GerE
MarR_2
Sigma70_ECF
HTH_3
IF2_N
HTH_37
Motif
Other DBs
NCBI-ProteinID:
UZX23637
UniProt:
A0ABY6R440
LinkDB
All DBs
Position
complement(5327965..5328852)
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AA seq
295 aa
AA seq
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MSPRLDAPRTPDAPSAAVPLPPVVDLPDRLLDTPLDRIGPVDARALSKQLFARLSELEEG
THDHAYVRNTLVELNLALVRFAAARFGTRSEPMEDIVQVGTIGLIKAIDRFELTRGVEFP
TFAMPTIIGEIKRFFRDTSWSVHVPRRLQELRLDLARAGDALAQRLDRAPTVAELAEELG
IAPEEVVEGMAASNAYTAASLDAQPDEEDGAGGEAALADRLGYEDNGLTGIEYIASLKPM
IASLPARERQILSLRFVTGLTQSEIGAELGISQMHVSRLLARTLGRLRRGLTLEE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccccggctcgacgccccgcgtacccccgacgcgccgtcggcagcagtccccctc
ccccctgtcgtcgacctgcccgatcgcctgctcgacacacctctcgaccggatcggaccg
gtcgacgcccgcgccctgtcgaagcagctcttcgcccggctctccgagctggaggagggc
acccacgaccacgcgtacgtccgcaacaccctcgtcgaactcaacctcgccctggtccgg
ttcgccgccgcccgcttcggcacccgcagcgaaccgatggaggacatcgtccaggtcggc
accatcggcctcatcaaggcgatcgaccgcttcgaactcacccgcggcgtcgagttcccg
accttcgcgatgccgacgatcatcggcgagatcaagcgcttcttccgcgacacctcgtgg
tccgtgcacgtgccccgcaggctccaggagctccggctcgacctcgccagggccggtgac
gcgctcgcccagcgcctcgaccgcgccccgaccgtcgccgaactcgccgaggagctcggc
atcgcgccggaggaggtcgtcgagggcatggccgcgagcaacgcctacaccgcggcctcg
ctcgacgcgcagcccgacgaggaggacggcgccggcggcgaggccgcgctcgccgaccgc
ctcggctacgaggacaacgggctcaccgggatcgagtacatcgcctccctgaagccgatg
atcgcctcgctgcccgcccgcgagcgccagatcctctccctccgcttcgtcaccggcctg
acccagtcggagatcggcgccgagctcggcatctcgcagatgcacgtctcccggctgctc
gcccgcaccctcggccggctgcgccggggcctgacgctggaggaatga
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