Streptomyces tanashiensis: LDH80_28935
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Entry
LDH80_28935 CDS
T08718
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
staa
Streptomyces tanashiensis
Pathway
staa03030
DNA replication
staa03430
Mismatch repair
staa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
staa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDH80_28935 (dnaE)
03430 Mismatch repair
LDH80_28935 (dnaE)
03440 Homologous recombination
LDH80_28935 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
staa03032
]
LDH80_28935 (dnaE)
03400 DNA repair and recombination proteins [BR:
staa03400
]
LDH80_28935 (dnaE)
Enzymes [BR:
staa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDH80_28935 (dnaE)
DNA replication proteins [BR:
staa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDH80_28935 (dnaE)
DNA repair and recombination proteins [BR:
staa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDH80_28935 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
UZX24483
LinkDB
All DBs
Position
6376992..6380531
Genome browser
AA seq
1179 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKAASEYQD
IFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESTAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEPRD
LMPKFDIPEGYTDTTWFREETMRGMHRRFPGGIPEDRMKQVEYEMDTIISMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVEGLVRQMGVHAAG
VIMSSEPIVEHAPIWVRHTDGVTITQWDYPQCESLGLIKMDFLGLRNLTIMDDAVKMVKA
NKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNKQQEITPIHPELEKPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQEGARKNNYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNES
ESNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYSSFPDFLDKVEAVVCNKRTI
ESLIKAGAFDEMGHTRKGMVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGDEASDEPGFGL
DVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQLNGGEHGDGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDTVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVVLTIPTVKVTPPMVSRLGEILKHHKGNTEVRI
KLQGPRTTTVLRLDRHRVTADPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagccgcccttcacgcacctccacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaacgagatgggcatgacccacatcgcc
atgtccgaccacggcaacctgcacggggcgtacgacttcttccactcggcgaagaaggcg
ggggtcacgccgatcatcggcatcgaggcgtacgtcgccccggagtcccggcgcaacaag
cggaagatccagtggggccagccgcaccagaagcgggacgacgtctccggttccggcggt
tacacccacaagacgatctgggcggcgaactccaccggactccacaacctcttcaagctc
tcctccgacgcgtacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgagggcctgatcgcctccaccggctgcccctccggcgagctgcag
acccgcctccgcctcggccagttcgacgaggccctgaaggccgcctccgagtaccaggac
atcttcggcaaggaccggtacttcctggagctgatggaccacggcatcgagatcgagcac
cgggtccgcgacgggctcctggagatcggcaagaagctcggcatcccgccgctggtcacg
aacgactcgcactacacgtacgcgcacgagtcgaccgcgcacgacgccctgctctgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcaccggctactac
ctcaagtccacggacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
cgcaacaccctcctggtcgccgagcagatcgacaccaccggcatgttcgagccccgggac
ctcatgccgaagttcgacatcccggagggctacaccgacacgacctggttccgcgaggag
accatgcggggcatgcaccgccgcttccccgggggcatccccgaggaccgcatgaagcag
gtcgagtacgagatggacacgatcatctcgatgggcttccccggctacttcctcgtcgtc
gccgacttcatcatgtgggcgaagaagcagggcatcgccgtgggccccggccgaggctcc
gcggccggttcgatcgtcgcgtacgccatgggcatcaccgacctcgacccgatcccgcac
ggactgatcttcgagcgcttcctcaaccccgagcgcgtctcgatgcccgatgtcgacatc
gacttcgacgagcgtcggcgcgtcgaggtgatccggtacgtgacggagaagtacggctcc
gacaaggtcgccatgatcggcacgtacggcaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtcctcggctacccctacgccatgggtgaccggctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcaacggcatcaccgacccctcgcacccccgc
tacagcgaggccggcgagatccgggcgatgtacgagaacgagccggacgtcaagaaggtc
atcgacaccgcccggggcgtcgagggcctggtccgccagatgggcgtgcacgcggccggc
gtgatcatgtccagcgagcccatcgtcgagcacgccccgatctgggtgcggcacaccgac
ggcgtcaccatcacgcagtgggactacccccagtgcgagtcgctcggcctgatcaagatg
gacttcctgggcctcaggaacctcacgatcatggacgacgccgtcaagatggtgaaggcc
aacaagggcatcgacctcgacctgctggccctgccgctggacgacccgaagaccttcgaa
ctgctccagcgcggtgacaccctcggcgtcttccagttcgacggcggccccatgcgttcg
ctgctgcggctgatgaagcccgacaacttcgaagacatctccgccgtgtccgccctgtac
cggccgggcccgatgggcatgaactcgcacacgaactacgccctgcgcaagaacaagcag
caggagatcaccccgatccaccccgagctggagaagccgctcgaagaggtgctcgcggtc
acctacggcctcatcgtgtaccaggagcaggtgcagaaggccgcccagatcatcgccggc
tactcgctcggcgaggccgacatcctccgccgcgtgatgggcaagaagaagcccgacgag
ctggcgaagaacttcacgatcttccaggagggcgcgcgcaagaacaactacagcgacgag
gccatccaggcgctctgggacgtgctggtccccttcgccggctatgccttcaacaaggcg
cactccgccgcgtacggcctggtctcctactggaccgcctacctcaaggcgaactacccc
gccgagtacatggccggtctgctcacctcggtcaaggacgacaaggacaagtccgccgtc
tacctcaacgagtgccgacggatgggcatcaaggtcctcccgccgaacgtgaacgagtcc
gagtcgaacttcgccgcacagggcgacgacgtgatcctcttcggcctctccgccgtccgg
aacgtcggcaccaacgtcgtcgagtcgatcatcaaatcgcgcaaggccaaggggaagtac
tcctccttccccgacttcctcgacaaggtcgaggccgtcgtctgcaacaagcggaccatc
gagtcgttgatcaaggccggcgccttcgacgagatgggccacacccgcaagggcatggtc
gcccaccacgaacccatgatcgacaacgtggtggcggtcaagcgcaaggaggccgaggga
cagttcgacctcttcggcgggatgggtgacgaggcgagcgacgagcccggcttcggcctg
gacgtcgagttctccgacgtcgagtgggagaagtcgtacctgctcgcccaggagcgcgag
atgctcggcctctacgtatccgaccacccgctcttcggcatcgagcacgtcctctccgac
aagacggacgcggcgatctcccagctgaacggcggcgagcacggggacggtgcggtcgtc
accatcggcggcatcatctccggcctgcagcgcaagatgaccaagcagggcaacgcctgg
gcgatcgccaccgtcgaggacctggccggctccatcgagtgcatgttcttcccggccacc
taccagctggtctccacccagctcgtcgaggacacggtcgtcttcgtcaagggacggctc
gacaagcgcgaggacgtgccccgcctcgtcgccatggagctgatggtccccgacctgtcg
aacgccgggaccaacgcgccggtcgtcctgaccatcccgacggtgaaggtgaccccgccg
atggtcagcaggctcggcgagatcctcaagcaccacaagggcaacaccgaggtgcggatc
aagctccagggtccccggaccaccaccgtgctccggctcgaccggcaccgggtgaccgcc
gacccggcgctcttcggcgacctgaaggtgctgctcggcccgtcctgcctggccggctga
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integrated database retrieval system
