Streptomyces tabacisoli: ABII15_02940
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Entry
ABII15_02940 CDS
T11033
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stac Streptomyces tabacisoli
Pathway
stac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABII15_02940 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stac03400
]
ABII15_02940 (ligD)
Enzymes [BR:
stac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABII15_02940 (ligD)
DNA repair and recombination proteins [BR:
stac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABII15_02940 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DZF_N
Rv0313_N
Motif
Other DBs
NCBI-ProteinID:
XCJ68980
UniProt:
A0AAU8IL20
LinkDB
All DBs
Position
unmamed1:610755..611687
Genome browser
AA seq
310 aa
AA seq
DB search
MTGSQSLRIGRRTLTLHRQDKRLLPAGGTGGAITKGDLTAYYREIAPYMLPHLRGRPLML
ERLPDGLDGSRVMQKNVPGYFPDWVHRVKVPKEGGSVVHPVCEDTATLVYLADQAAVTLH
RWQSRVSDIRHPDRVVFDLDPSGEDDFEAVREAARQVRELLDRVGLASGAMTTGSRGLHV
VAVLRGRSTVDDVHDFAKKAADTLAAAHPDRLTTAARKADRGTRLYLDVQRNAYAQTAVA
PYTVRAKPGAPVATPIAWDQLDDPGLTARRWTIANVVDQARSDPWGGLARKGRALGPARD
ALRKLSDEHA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggtcccagtccctgcggatcggccgccgcacgctgacactgcaccggcaggac
aagaggctgctgcccgccggcggaaccggtggcgcgatcaccaagggggatctcaccgcc
tactaccgggagatcgccccgtacatgctgccgcacctgcgcggacgcccgttgatgctg
gaacgtcttcccgacggtctcgacggctcccgcgtcatgcagaagaacgtccccggatac
ttcccggactgggtgcaccgcgtgaaggtgcccaaggagggcggcagtgtcgtgcacccg
gtctgcgaggacacggcgacgctggtgtacctcgccgaccaggcggccgtcaccctgcac
cgctggcagtcgagggtttcggacatccggcaccccgaccgcgtggtgttcgacctcgat
ccgtccggggaggacgatttcgaggcggtccgcgaggccgcccgccaggtgcgggaactc
ctcgaccgcgtcggtctcgcctccggggcgatgaccacgggctcgcgcggtctgcacgtg
gtggccgtcctcaggggcagatccaccgtcgacgacgtccacgacttcgccaagaaggcg
gccgacaccctggcggcggcccaccccgaccggctcaccaccgccgcgcgcaaggcggac
cggggcacccggctgtacctggacgtgcagcgcaacgcctacgcgcagacagccgtcgcc
ccgtacacggtgcgcgcgaaacccggcgcccccgtggccaccccgatcgcctgggaccag
ctcgacgaccccggactcacggcacggcgctggaccatcgccaacgtcgtcgaccaggcc
cggtcggatccctggggcggtctggcacgcaagggacgggcgctgggacccgcccgcgac
gcgctgcggaagctgtcggacgaacacgcctga
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