Streptomyces tabacisoli: ABII15_13390
Help
Entry
ABII15_13390 CDS
T11033
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stac Streptomyces tabacisoli
Pathway
stac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABII15_13390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stac03019
]
ABII15_13390
03009 Ribosome biogenesis [BR:
stac03009
]
ABII15_13390
Enzymes [BR:
stac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABII15_13390
Messenger RNA biogenesis [BR:
stac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABII15_13390
Ribosome biogenesis [BR:
stac03009
]
Prokaryotic type
rRNA processing factors
ABII15_13390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XCJ70905
UniProt:
A0AAU8IQS8
LinkDB
All DBs
Position
unmamed1:complement(2897730..2901764)
Genome browser
AA seq
1344 aa
AA seq
DB search
MPEPTEPTTSELDSPSDTLPPRRRRRAASRPAGPPVSPTAADTEAAAPAIPAAATDAEDE
LDAVNEAPEAAAAAETTPAQETQDAAPAARPRRRATRRASAPTGAPAQAEAAEPVVEPVT
EPAAAPAAEEAPAEAAAPRRRRRATRTASAPVTDAAEAAAPAADEPQAVAEETPAAEEAP
AEAAAPRRRRRATRTVATPAAEAPAAETPAVEAAPAEEPQAAAPVAEPAAETPAEDAAPR
RARRRATRAVSTPEAPQAAEPVAEPAAQEQAAPAAEPAEAPAEDDAPRRPRRRATRKAAG
GFSEPKQTKGRQAKQADTADAEGGSRPKRPSVAVFQAPVFTEPMFQTPERAAAAAAAEAA
GEQRTEPEPEPAAVVEEDQTPRRRRRRRATDERPAAEPEAVTAAAPEPVVDEDADDADEQ
TAEAADEQDSDGHDDHDEQGDRPARRRRRGGRRRRRGDAADTDADADAEGASDEDADDEH
TDEQDEHADDQDEQDTHGASGGSSSSRRRRRRRRRAGDASSDAEQSSDDPERTVVKVREP
RKKDEKSERSTSSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVER
VMVVRQNGDRTQIGVLEDNILVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKG
RNAVLYAGEVNFEALGMANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRY
LVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQ
AQWEDIQKKSKQISTSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVNH
VAPDLADRLSRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTG
KFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLEC
LGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQASSAGSGG
GGKRKKRGRGGNGADHQHETHEHDTHEHESTPEPAETEAEVAAEVAAPVALPEPEFVADE
ELYSSAAEAEAAAGSRGRSRRRATRRASAPAGAPKAEQTDKRSARAERARKAEQAEEQRE
AAAAAPVADAEPVVEEPKPQETPEPVVEQAAEAPAPRARRRATRKASAPAGAPKASSDEA
AVVTVVESEPKAAEEPKAAEETAPETEAAAPARPRRRAVRKATAPTASEETAVVVVPSAT
DEPAKEESAEKPAAKKTARKTAKKATAKKAATTTKKTAAKKTAAKKTTAKKAATKTAAKK
TTAKKTAAAEQQSPPSVTAAADEA
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagccgaccgaacccaccacctccgagctggacagccccagcgacaccctgccc
ccgcgccgccggcgccgggccgcgtcgcgccccgcgggcccgcccgtgagccccaccgcc
gctgacaccgaggccgccgcgccggccataccggccgctgccacggacgccgaggacgaa
ctcgacgccgtgaacgaggcccccgaggccgctgccgccgccgagaccaccccggcgcag
gagacgcaggacgcggcgcccgccgcccgcccgcgccgccgtgccacccggcgcgcctcc
gcgcccaccggtgcgcccgcgcaggccgaggccgccgagccggtcgtcgaaccggtcacc
gagccggccgccgcgcccgccgccgaggaggccccggccgaggccgccgcgccgcgccgt
cgccgccgcgcgacccgtaccgcgtccgcccctgtgacggacgccgccgaggccgccgcg
cccgccgccgacgagccgcaggccgtcgcggaggagaccccggccgccgaggaggcgccc
gccgaggccgccgcgccgcgccgtcgccgccgcgcgacccgcaccgtcgccacgcccgcc
gccgaggcccccgccgccgagacgcccgccgtcgaggcggccccggccgaggagccgcag
gccgcggcgcccgtcgccgagccggccgccgagaccccggccgaggacgccgccccgcgc
cgtgcccgccgccgggccacccgcgccgtgtccacgcccgaggccccgcaggccgccgag
cccgtcgccgagccggccgcccaggagcaggccgcgcccgccgccgagcccgccgaggcc
ccggccgaggacgacgccccgcgccgcccccggcgccgcgccacccgcaaggccgccggc
ggcttctccgagcccaagcagacgaagggccgccaggcgaagcaggccgacacggccgac
gccgagggcggcagccgcccgaagcgcccgtccgtcgccgtcttccaggcgccggtcttc
accgagccgatgttccagacgcccgagcgtgccgctgccgccgccgcggccgaggccgcc
ggtgagcagcgcaccgagcccgagcccgagccggccgcggtcgtcgaggaggaccagacg
ccgcgccgtcgccgccgtcgccgcgccaccgacgagcgccccgccgccgagcccgaggcc
gtgaccgccgccgcgccggagcccgtcgtcgacgaggacgccgacgacgccgacgagcag
accgccgaggcggccgacgagcaggactccgacggccacgacgaccacgacgagcagggc
gaccgcccggcccgccgccgccgtcgcggtggccgccgccgtcgtcgcggggacgccgcc
gacacggacgccgacgccgacgccgagggcgcgtccgacgaggacgccgacgacgagcac
accgacgagcaggacgagcacgccgacgaccaggacgagcaggacacgcacggcgcgtcc
ggcgggtcgagcagcagccgtcgccgtcgtcgtcgccgccgtcgcgccggtgacgcgtcc
tccgacgccgagcagtcctcggacgacccggagcgcaccgtcgtcaaggtccgcgagccg
cgcaagaaggacgagaagtccgagcgctcgacctcctcggacgaggtgcagtccatcaag
ggctccacgcgtctcgaggcgaagaagcagcgccgccgcgagggccgcgagcagggccgc
cgccgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgc
gtgatggtcgtccggcagaacggcgaccgcacccagatcggcgtgctcgaggacaacatc
ctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtgtacctg
ggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggc
cgcaacgcggtgctgtacgccggtgaggtcaacttcgaggcgctcggcatggccaacggg
ccgcgccgcatcgagaccgccctgaagtccggccagtccgtgctcgtccaggtcaccaag
gacccgatcggccacaagggcgcccgcctgaccagccaggtctcgctgcccggccgctac
ctggtctacgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgag
cgcgcgcgcctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtg
cgcaccgccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgagcgtctgcag
gcccagtgggaggacatccagaagaagtccaagcagatctcgacgtcgtcgccgagcctg
ctgtacggcgagccggacatgaccgtccgcgtcgtgcgcgacatcttcaacgaggacttc
tccaaggtcatcgtcagcggtgacgaggcgtgggagaccatccacggctacgtcaaccac
gtcgcccccgacctggccgaccggctgtcccgctggacgtcggaggtcgacgtcttcgcg
acgtaccggatcgacgagcagctcgccaaggcgctcgaccgcaaggtgtggctgccctcc
ggcggctccctggtgatcgacaagaccgaggccatgatcgtggtcgacgtcaacaccggt
aagttcaccggccagggcggcaacctcgaagagaccgtgaccaggaacaacctggaggct
gccgaggagatcgtccgccagctgcggctccgggacctcggcggcatcgtcgtcatcgac
ttcatcgacatggtcctggagtccaaccgggacctggtcctgcgccgtctcctggagtgc
ctgggccgcgaccggaccaagcaccaggtcgccgaggtcacctcgctcggcctggtccag
atgacccgcaagcgcgtcggacagggcctcctggagtccttctccgagacctgcgtgcac
tgcaacggccgcggcgtcatcgtccacatggagcaggcgtcctccgccggcagcggtggc
ggcggcaagcgcaagaagcgcggccgcggcggcaacggcgcggaccaccagcacgagacg
cacgagcacgacacgcacgagcacgagtcgacgccggagccggccgagaccgaggccgag
gtcgccgcggaggtggccgccccggtggcgctgcccgagcccgagttcgtggcggacgag
gagctgtactccagcgccgccgaggcggaggccgcggcgggcagccgtggccgctcgcgc
cgccgtgccacgcgccgtgcgtcggccccggccggtgccccgaaggcggagcagaccgac
aagcggtccgcgcgtgccgagcgggcccgcaaggcggagcaggccgaggagcagcgggag
gccgccgcggccgccccggtcgccgacgccgagccggtcgtcgaggagccgaagccccag
gagacgcccgagcccgtggtggagcaggccgccgaggccccggccccgcgcgcccgccgt
cgtgccacccgcaaggccagcgcccccgccggtgccccgaaggcgtcctcggacgaggcc
gccgtggtgaccgtcgtggagtcggagcccaaggcggccgaggagccgaaggccgccgag
gagacggcgccggagaccgaggcggccgccccggcccgcccgcgccgccgtgccgtccgc
aaggcgaccgccccgaccgcgtccgaggagacggccgtcgtggtcgtcccgtcggccacg
gacgagcctgccaaggaggagtccgcggagaagcccgccgccaagaagacggcccgtaag
acggccaagaaggcgacggcgaagaaggcggccaccaccaccaagaagaccgcggccaag
aagacggccgcgaagaagacgacggccaagaaggcggcgaccaagaccgccgccaagaag
acgaccgcgaagaagaccgcggcggccgagcagcagtcgccgccgtccgtcacggccgcg
gccgacgaggcctga
DBGET
integrated database retrieval system
