Spirosoma taeanense: HNV11_00295
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Entry
HNV11_00295 CDS
T07080
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stae
Spirosoma taeanense
Pathway
stae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNV11_00295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stae03021
]
HNV11_00295 (rpoB)
03400 DNA repair and recombination proteins [BR:
stae03400
]
HNV11_00295 (rpoB)
Enzymes [BR:
stae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNV11_00295 (rpoB)
Transcription machinery [BR:
stae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNV11_00295 (rpoB)
DNA repair and recombination proteins [BR:
stae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNV11_00295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QJW87917
UniProt:
A0A6M5XZ81
LinkDB
All DBs
Position
57407..61276
Genome browser
AA seq
1289 aa
AA seq
DB search
MATNAKISTRKNFATIQPVIGYPDFLDIQVKSFKDFFQLDTPSNQRSEEGLFKVFQENFP
ISDSRENFKLEFIDYSVDPPKYSVDESIDRGLTYSVPLKAKLRLSNNDPDNEDFETIEQE
VFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARIIPFKGSWI
EFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEVPATPANLKKAIGR
RLAARVLRTWTEDFVDEDTGEVVSISRNEVLLERDSAISVDDIDTITESGQKSVILHKED
MNMADYNIIYNTLQKDSSNSEKEAVEQIYRQLRNADAPDEQTARDIIQSLFFSDKRYDLG
DVGRYRINKKLGLDISSDMKVLTTEDIVSIVKYLIGLINSKAVVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQT
NPLAEVTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVY
AKINSMGFIETPYRVIENGKVSMDKPVMYLTAEEEDTHYIAQANAGIDKKGNFQVDRLKA
RFEGDFPMAEPANVTFMDIAPNQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLRPE
APIVGTGLEGRVAVDSRTLVIAEADGVIEFVDSTKIVVRYDLDDDQIAVTFDEDRKTYNL
IKFRRTNQDTCINIKPTVLKGQKVKKGDVLCEGYATQAGELALGRNMKVAFMPWQGYNFE
DAIVISERVVREDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEETVRNLDENGIVRV
GTEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLKGVVIDTKL
FARPAKEDRGKHKDEVKALMKKYGRELNDFRARMIDKMVALLDGKTSQGVKHKFGDEIVS
KGVKFSRKNITDNLFPDKNPYRDESGYAVPEEANLLIDLNLDAWTDDDKLNQMIVQLIKN
YNNRRSEITGRFKRERFTLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVA
RIVRDEDMPFLEDGTKVDIVLNPLGVPSRMNLGQIYETVLAWAGQKLDRKYATPIFDGAT
EQQVADELAEAGLPSFGRTYLYNGLTGERFDQSVTVGIIYMLKLGHLVDDKMHARSIGPY
SLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILQEILTVKSDDVVGRAKAYEAIVKG
ENLPKPNIPESFNVLVHELRGLALEITLE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaaacgcgaaaatcagtacgcgcaaaaattttgcgacgattcagccagtgatt
gggtatccagacttcctggatattcaagtaaaatccttcaaagattttttccagcttgat
acgccttccaaccaacggtcggaagaagggttgttcaaggtttttcaggaaaatttccct
atctccgactcccgcgaaaattttaagctggagtttattgattactccgttgatccaccg
aaatattcggtcgacgagtcgattgatcggggtttaacgtattcggtacctctgaaagcc
aaactgcggctgtcgaacaatgatcctgacaatgaggattttgagacaatcgagcaggaa
gttttcctggggaatataccatacatgaccgaaaaaggctcgttcgtcattaacggagct
gagcgggtgattgtttcgcagcttcaccgttcgccgggtgtgttcttctctatgagcaaa
catacaaacggtacgaagctatactctgcccggattatcccattcaaagggtcctggatt
gagttttcaacggacgtcaacaacgtaatgtatgcttacattgaccggaagaaaaagttt
ccggtgacgacgttgttacgggcgattggttttggctccgataaagatattcttgacctg
tttggtttgtcggaagaagtaccggctacgcctgccaatttaaagaaagccattggccgt
cgtttagccgcacgggtactgcgcacatggacggaagacttcgtagatgaagatacgggc
gaagtagtttcaatcagccggaacgaggtgctcttggagcgtgactcggccatttcggtt
gatgatattgacacgattacagaatcaggtcagaagtcagtcatcctgcataaggaagac
atgaacatggctgattacaatattatttataacacgctgcagaaagatagctctaactct
gaaaaagaggcagtggagcagatctatcggcaattacggaatgcggacgctcctgatgag
caaacagcgcgtgatatcattcagagcctgttcttctcagataagcgttatgatcttggc
gacgtaggccgttaccggatcaataaaaaactgggtcttgacatctcgtcagacatgaaa
gtattaaccacagaagacatcgtgtcgattgtgaaatacctgattggtctgatcaactcg
aaggctgttgtcgatgatattgaccacctcagcaaccggcgcgtccggactgtaggtgaa
caattgtacgctcagttcggagttggcctggcgcgaatggcgcggacaattaaggagcgg
atgaacgtgcgggataacgaggacttcaaacccgttgaccttattaacgcccgtacgctg
tcgtcggttatcaactcgttcttcggaacgaatcagctgtcgcagttcatggaccagacg
aacccgctggccgaagtgacgcacaagcgtcgtatgtcggcgctcggaccgggtggactg
tctcgcgaacgggctggtttcgaagttcgtgacgtacactatacgcactacggtcgtctg
tgtacaattgaaacgccggaaggtccgaacattggtctgatttcatcgctatgcgtatac
gcaaaaattaacagcatgggctttatcgaaacaccctaccgggttattgagaacggtaag
gtgtcgatggataaaccggtgatgtacctgaccgccgaagaggaagacacgcattatatc
gcccaggctaatgctggtattgataagaaaggcaacttccaggttgatcgcctgaaagct
cgttttgaaggtgacttcccaatggctgaacctgcgaacgtaaccttcatggatattgct
ccgaatcagattgtatcggtggcggcttccatgattccgttcctggagcatgacgatgcg
aaccgagccctaatgggatcgaacatgcaacgtcaggctgtaccgctgcttcggcctgaa
gcccccattgtgggcacaggtctggaaggtcgtgtagccgttgattcccgtacgctggta
attgctgaagccgatggagttatcgagtttgttgattcgaccaagattgtcgttcgctac
gacctcgatgatgatcagattgccgttacgttcgatgaagatcggaagacgtacaatctg
attaagttccgtcggacgaaccaggatacgtgcatcaacattaagccgactgtgctgaaa
ggccagaaagtgaaaaaaggagatgttctctgcgaaggttacgccacgcaggctggtgag
ttggcgctaggccggaacatgaaggttgccttcatgccctggcagggttacaactttgag
gatgccatcgtaatttcggagcgggttgttcgggaagatatctttacgtcgatccatatc
gaagagtttgagctggaggtacgggatacgaaacggggtgaagaggaactgacctcggag
attccaaacgtaagcgaagaaacggttcgtaaccttgacgaaaatggtatcgttcgcgta
ggtacggaggtaaaagaaggcgacattctgatcggtaagattacgccgaaaggggaaagc
gatccgacgccggaagaaaagctgctccgcgccatctttggcgacaaagccggtgacgtg
aaggatgcctcgaagaaagcgcccccgtccctgaaaggcgttgttatcgacaccaaactg
tttgcccgtccagctaaagaagaccggggcaagcacaaggatgaggtgaaagccctgatg
aagaagtacggccgtgaactgaacgacttccgggcccggatgatcgacaaaatggtggct
ttgctggatggcaaaacaagccagggcgtcaagcacaagtttggtgacgagattgtcagc
aaaggggtgaagttcagccgcaagaatattacggataatctgttcccggataaaaatccg
taccgtgacgaaagtgggtacgctgttccggaggaagctaacctgttgattgacctcaat
ttggatgcttggacggatgacgataagctgaaccagatgattgtgcagttgatcaaaaac
tataacaatcgtcggagcgaaattaccggtcgtttcaaacgggaacggtttacgcttgaa
gtaggagacgaactaccagccggtatcgtaaaactggctaaagtctatatcgccaagaag
cgtaagctgaaagtaggtgataaaatggctggtcgccacggaaacaaaggggttgttgcc
cggattgtgcgcgacgaggacatgccgttcctcgaagatggaacgaaagtagatatcgtc
ctgaacccacttggcgtaccaagccggatgaacctgggccagatttacgaaaccgtattg
gcctgggctggtcagaaactggatcggaagtatgcgactccaattttcgacggcgctacg
gaacagcaggttgctgatgaactagccgaagcaggtctgccatcgtttggccggacatat
ctctacaatggtctgacgggtgagcggtttgatcagtcggtaacggttggtatcatttac
atgctcaaactcggtcacctggtagacgacaagatgcacgctcgttcgatcgggccgtac
tcgctgattacgcagcagccgctgggtggtaaagcgcagtttggtggccagcggtttggt
gagatggaagtttgggcgctcgaagcctttggggcatccaacattctgcaggaaatcctg
accgtgaaatccgatgacgtagtcggccgtgcgaaagcatatgaggctatcgtgaaaggt
gaaaacctgccgaagccgaacattcccgagtcgttcaacgtactcgtacacgagttacgt
ggtctggcacttgaaattacacttgaataa
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