Spirosoma taeanense: HNV11_00300
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Entry
HNV11_00300 CDS
T07080
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stae
Spirosoma taeanense
Pathway
stae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNV11_00300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stae03021
]
HNV11_00300 (rpoC)
03400 DNA repair and recombination proteins [BR:
stae03400
]
HNV11_00300 (rpoC)
Enzymes [BR:
stae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNV11_00300 (rpoC)
Transcription machinery [BR:
stae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNV11_00300 (rpoC)
DNA repair and recombination proteins [BR:
stae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNV11_00300 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QJW87918
UniProt:
A0A6M5XZ83
LinkDB
All DBs
Position
61397..65767
Genome browser
AA seq
1456 aa
AA seq
DB search
MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSTNQHLDD
KDPNKFIAKMGAEALEMLLSRLQLDELSYQLRHAAATDTSQQRKAEALKRLKVVEAFREA
NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAILEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEYPIT
GEGMTFYGAEEVIIGINEGKISKHANIKCRVKVRDENDQLVDKIIDTVAGRLLFNQAVPE
EVGYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFKGGLSIGLSDVMIP
EAKQGLVEEAKAEVQSVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQLEADQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDCGTLRGLQVSALKDNEDI
VEPLSERILGRTTVHDIFDPLKKDADNRPLKLVGAGELITEEIAAAIDETSIETVEIRSV
LTCESRQGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNIA
VDASIKAKFDGLIEFEEMRTVESEDSEGNPQTVVMGRSGEVRIVNPNDRNVVLISNNVPY
GAFLRVKEGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYREEFDEQTGFQEM
VIIESRDKAKNPAIIVQGTTTLSLHLPDADAGGQLQKSYNLPVGSRLVVKEGQQIKAGQP
LAKIPRNVGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGTIKRGNREIFIESK
DGTKKKYLVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTAVQEYLVNEIQEVY
RLQGVKINDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAFREENDKVLDAKVVMDA
GDSVNFKPGMIVTSRQLRDENSSLKRRDMALVTVRDAMAAVSQPTLMGITQSSLGTDSFI
SAASFQETTKVLSEASIRGKRDMLDGLKENVIVGHLIPAGTGIRRYQNVIVGSKEELETI
TESREQFARSKKRAAV
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaaaagaacaagaaactcaacagcgactttgccagcgtgacgatcagtctg
gcgtcgccggagtctattttggagagttcctacggcgaagtgacgcagccggagacgatt
aactaccggacctataagcccgagatgggtggcttgttctgcgagcgcatctttgggcca
gtaaaggactgggaatgtcactgtggtaaatacaagcgtattcgttacaaaggcatcatc
tgcgaccgttgtggcgtagaggtgacagagaagaaagtacgccgggagcggatgggccac
attgaactggtggtgccggtggcgcatatctggtatttccgctcattgccaaacaagatt
ggttatttgctcggtctttcgaccaagaaactcgaccaggttatctactacgaacgttac
gtagtcgtgcagccgggtgtcaaggccgaagacggtattaaccaacttgatttcctgacc
gaggacgaatacctcgatatcattgacaagctgccaagcaccaaccagcatctggacgat
aaggacccgaacaagttcatcgcgaagatgggggccgaagcgctggaaatgctgttatcc
cgtctgcagttagacgagctttcttatcagctgcgtcacgcggctgctaccgatacatcg
cagcagcggaaagctgaagccctcaagcggttgaaagtcgtcgaagcgttccgggaagcg
aatggccgcatcgagaaccggcctgagtggatggtcattaaaatggtaccggtcattcca
cccgaactgcgtccgctcgtccctctcgatggtggccggtttgctacctccgacctgaac
gatctgtatcgccgggtaattattcggaacaaccgcctgaagcgtctgattgagatcaaa
gcgcccgaagttattctgcggaatgaaaagcggatgctgcaggaagcggttgactcgctg
ttcgacaactcgcggaaggtgaacgccgttcgttcggaaggtaatcgggcgctgaaatca
ctgtccgacatgctgaaaggcaagcagggccgtttccggcaaaacctgctgggtaagcgc
gttgactactcgggtcgttcggtaattgtcgtaggaccagaactgaagttgcacgaatgt
ggtctgccaaaggatatggcggctgaattgtttaagccgttcgtcatccggaagctcatc
gagcggggtatcgtcaagacagttaagtcggctaagaaaatcgttgaccggaaagatccc
gttatctgggacatactggagaacgtgctgaagggccatcctgttctgctgaaccgggct
ccaacgctgcaccgcctgggtattcaggcattccagccgaagctgatcgaaggtaaggct
attcagttgcatcccctcgtctgtacggcgttcaacgctgactttgacggtgaccagatg
gccgttcacgtgccgctgggtcaggaggcaattctggaagcatcgttattgatgctggct
tcgcacaacattctgaaccctgccaacggggcgccgattacggtaccgtcgcaggacatg
gtgttgggtctgtattacgtaacgaaaggccgtaagtcaacacctgagtacccgatcacg
ggtgaaggaatgacgttctacggtgccgaagaagtcatcattggtattaacgaaggtaaa
atttcgaagcatgccaatatcaagtgccgggtaaaagttcgggatgagaatgatcagctg
gttgataaaatcattgataccgtagcgggtcggttattatttaaccaggcggtaccggaa
gaggttggctatatcaatgaactgctgacgaagaaaaagctgcagcaaatcattgccctc
atcttcaaaatctcgggtggtgcacggacggctcagttcctcgatgagattaaagagctt
ggtttccagatggcgttcaaaggcggtctatcgatcggtctgagcgatgtcatgattcca
gaagcgaagcagggccttgttgaagaagcaaaagctgaggtacagagcgtttgggacaac
tacctgatgggtctgatcacggagaacgaacggtataaccaggttattgatatctggacg
cgcgttaactcccgactgaccgagacgctgatgaagcagctcgaagccgatcagggtggt
ttcaactcgatctatatgatgatgcactcgggcgcccgtggttcccgtgagcagattcgt
cagctgggcggtatgcggggactgatggctaagccgcagaaaaacctgcagggctccgtt
ggtgagattattgagaacccgattctatcgaactttaaagaaggtctcgacgtactggag
tacttcatctcgacgcacggtgcccggaaaggtttggccgatacggctctcaaaacggcc
gatgctggttacctgacccggcgtctgcacgatgtagcgcaggatgttatcatcagcgaa
gatgactgcggtacgttacgtggtcttcaggtctcggccttgaaagacaacgaagatatc
gtagagccgctgtcggagcggattctgggccgcacgacagtgcacgatattttcgacccg
ctgaaaaaagacgcggataatcggccattgaaactggtaggcgctggcgaattgattact
gaagagattgccgcggccattgatgaaacgagcatcgaaacggttgaaatccgttcagtg
cttacgtgtgaatccaggcagggcgtttgcgctaagtgctacggccgtaacctggcttcg
ggccgcatggtcgacatcggtgaagctgttggtgtaattgcatcgcagtctattggtgag
cctggtacgcagttaacgctccgtaccttccacgtcggtggtactgcttccaacatcgca
gttgacgcttcgatcaaagcaaaattcgacggtctgatcgagtttgaagagatgcgaaca
gttgagtcggaggattcggaaggaaacccgcaaacggtcgtaatgggtcgttcgggtgaa
gttcggatcgtaaacccgaatgatcggaacgttgttctgatcagcaacaacgtaccttat
ggtgcattcctgcgggtgaaggaaggtgatatggtgaaaaagggcgacgatatttgcgcc
tgggatccgtataacgctgttattctgtccgagctaacgggtacgctaaacttcgacgct
attgaagacggtattacctaccgcgaggagttcgacgaacagacgggcttccaggagatg
gtgatcatcgaaagccgcgataaggcgaagaacccggcgattattgtacagggaacaacg
accttgtcgctgcacctgccggatgctgacgcaggcgggcagttgcagaagagctacaac
ttgccggttggatctcgtctggtcgtgaaagaagggcagcagattaaagctggtcagccg
ctggccaagattccacgtaacgttggtaaaactcgtgatattacgggtggtctgccgcgc
gtaacggaattgtttgaagcccggaacccgtcaaacccggccgtggtgagtgaaattgat
ggtgttgtcacgtatggcacgatcaagcgcggtaaccgtgagattttcatcgagtcgaaa
gacggcacgaagaaaaaatatctcgtaccgctgtcgaagttcatccttgtacaggataac
gacttcgtacgggctggcgctccgctgtctgacggtgctatcacaccaagcgacattctg
gctatcaaaggtccgacggctgttcaggaatacctggtgaacgagattcaggaagtatac
cgtctgcagggggttaagattaacgataagcacattgaagccattgttcggcagatgatg
cagaaagttgagattatcgactcgggcgataccaacttccttgaaggacaggttgttgat
aagtgggcattccgcgaagaaaacgacaaggtccttgacgccaaggttgttatggacgcc
ggtgactcggttaacttcaagcctggtatgattgtgacgagccgccagctacgtgacgag
aactccagcctgaaacgccgtgacatggctttagtgaccgtacgtgacgcaatggctgct
gtttcgcagccgacgctgatgggtattacgcagtcatcgctcggtacggatagctttata
tcggcagcatctttccaggaaacaacgaaagttctgagtgaagcttcgattcgcggtaag
cgtgacatgcttgacggcttgaaagagaacgttattgtaggccacctgattccggctggt
acaggcattcggcgttaccagaacgtgattgttggttcgaaagaagaactcgaaacgatc
acggaatcgcgcgaacaatttgcccggagtaagaagcgggccgcggtttaa
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