Spirosoma taeanense: HNV11_06645
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Entry
HNV11_06645 CDS
T07080
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stae
Spirosoma taeanense
Pathway
stae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNV11_06645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stae03019
]
HNV11_06645
03009 Ribosome biogenesis [BR:
stae03009
]
HNV11_06645
Enzymes [BR:
stae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNV11_06645
Messenger RNA biogenesis [BR:
stae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNV11_06645
Ribosome biogenesis [BR:
stae03009
]
Prokaryotic type
rRNA helicases
HNV11_06645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QJW89090
UniProt:
A0A6M5Y6X9
LinkDB
All DBs
Position
complement(1551678..1553747)
Genome browser
AA seq
689 aa
AA seq
DB search
MKTKKTKTDGQDDVLTMENAATEVSTVDTIDTEAPVANTEVAQAVDEVITVDDAPAASAP
QETTPDQPKTDPNQILFSSLDISDELLQAVTDMGFISPSPIQAEAIPPILAGRDVIGQAQ
TGTGKTAAFGIPALELVDVQDRSVQTLILCPTRELALQVAEEIKKLSKYKRGVRVEAIYG
GDSIERQIRSLRNGVHIVIGTPGRVMDHMERNTLKLDNVKMMILDEADEMLDMGFREDIE
SILAEMPEERQTILFSATMSKPIMQITQKFQKDPVLVKVVKKELTNTNIEQVYFEVKPKA
KVEVMCRLIDMYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKF
RSGTTSILVATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSMVGR
DEKYRFREIQSYTKVKVEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYEDLLTQL
HHTGFSTEQVVAALVKRSMGLEKNEFADQNLGLEDDRRRDDRRGNDRFGDRSERGGRFED
RRGGSRFGDRDDRGGSRFGDRPRFNDRNERPSFGSRDDRGGRFEDRRGAGRDGDRKPYAD
RDEQRAPREREANMTRLMVTIGRKDYVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVD
VPKDVANRVVDAMEGNTIKGRRVNIEIAR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaaaaactaaaaccgatggtcaggacgacgttctgacgatggaaaacgca
gctacggaagtttcgaccgtggacacaatcgacaccgaagcccccgtcgccaataccgaa
gtagcgcaggccgttgacgaagtcattacggttgacgacgctcccgcagcttctgctccg
caggaaaccacgcctgatcagcccaagaccgatcccaatcagattctgttctccagtctg
gatatttcggacgaactgctgcaggccgtaaccgacatgggcttcattagcccgtcgccg
attcaggccgaagcgattccgccaattctggccggtcgtgatgttatcggtcaggcccag
acaggaacgggtaaaacggctgcctttggtattccggcgctcgaattggtggatgtgcag
gatcgctcggtgcagacgctgattctttgccccacgcgggagctggccctgcaggtagcg
gaagagattaagaagctgtcgaaatataagcggggtgttcgggtagaagccatctacggc
ggtgactcgattgagcgccagatccggtcgctgcgcaacggtgtccatatcgttatcggt
acgcccggtcgcgtcatggaccatatggagcgtaatacgctgaagctcgacaacgtgaag
atgatgattcttgacgaagccgacgaaatgctcgatatgggcttccgtgaagacatcgaa
agcattctggcggaaatgcccgaagagcggcagacgatcctgttctcggcgacgatgtcg
aagccgatcatgcagatcacccagaagttccagaaagatcccgtcctggtgaaggtggtt
aagaaagagctgaccaacaccaacatcgagcaggtctattttgaggtaaaacccaaggcg
aaagtcgaggtaatgtgccgcctgatcgacatgtacgacctgaaactgctgctggtattc
tgtaatacgaaacgtaaggttgacgagatcgtcgaagacctgcagattcggggttatcag
gctgagggtctgcacggcgacctgcggcaggcacagcggaataacgtgatgagcaagttt
cgctcgggtacgaccagcattctggtagcaaccgacgtagccgcccgcggtattgacgtg
gacgatgtcgatgcggttatcaacttcgatatcccactcgacgaagaatattacgtacac
cgcattggccggacgggccgggccggcaaatcgggccgggcgttctcgatggttggccgc
gatgagaaataccggttccgcgaaattcagtcctacaccaaagtaaaggttgaaaaaggc
gtaattccgtctttcgaagatatcgttggtgtccgcaaggctcgctttatcgagcagttg
cagcagaccattcaggaaagcaaagacctgaacttatatgaagacctgctgacacagctt
catcataccggcttttcgaccgagcaggtagtagccgcactggtgaagcgcagcatgggt
ctggagaaaaacgaatttgccgatcagaacctgggtctggaagacgaccgtcggcgcgat
gatcgccggggtaacgaccgatttggcgaccgcagcgagcgtggaggtcggtttgaggat
cgccggggtggttcgcgctttggcgaccgtgacgatcggggtggcagccgtttcggcgac
cgcccccggttcaacgaccgcaacgagcggccgtctttcggtagccgcgatgaccgcgga
ggccggtttgaggatcgccggggtgctggccgtgatggcgaccggaagccgtatgctgat
cgtgacgaacagcgggctccacgcgaacgcgaagccaacatgacccgcctgatggtgacc
atcggacgtaaggattacgttcggccgggcgacatcgtcggcgcaattgcaggcgaagcc
aacattccgggcaatagcatcggcagcatcgacattttcgacaagttcacctacgtggac
gttccgaaggacgttgctaaccgggttgttgacgccatggaaggcaacaccatcaaaggc
cgccgggtgaatatcgaaattgcacggtaa
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