Spirosoma taeanense: HNV11_17590
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Entry
HNV11_17590 CDS
T07080
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stae
Spirosoma taeanense
Pathway
stae03410
Base excision repair
stae03430
Mismatch repair
stae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HNV11_17590 (recJ)
03430 Mismatch repair
HNV11_17590 (recJ)
03440 Homologous recombination
HNV11_17590 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stae03400
]
HNV11_17590 (recJ)
DNA repair and recombination proteins [BR:
stae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HNV11_17590 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HNV11_17590 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNV11_17590 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PRA-PH
sCache_like
Motif
Other DBs
NCBI-ProteinID:
QJW91057
UniProt:
A0A6M5YA20
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Position
complement(4200363..4202105)
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AA seq
580 aa
AA seq
DB search
MIAQSTPPPKRWISKPFPDSTQQRAAIASLTQSLNVSPFLASLLVQRGITSFEEARQFFR
PEIGHLHNPFGMKDMDRAIKRLEKAMLPGREEKILIYGDYDVDGTTSVALVYGFLKNYHA
KIDYYIPDRYSEGYGISRQGIEWAAANGFTLIIALDCGIKSIERVAEAKALGVDFIICDH
HRPGAELPEAAAVLDPKREDCAYSYKELSGCGVGFKLLQAFCLRKEIPLEQLYPYLDLVV
VSIASDIVPVTGENRVLAYYGLKYLNSQPRTGLKALIKIAGFRSELDITNVVFGLGPRIN
AAGRIQHAKAAVQLLLAELEEEADEFAMAINKHNNDRRNFDSSITEQALEMIRNSETLLN
AKSTVLYDANWHKGVIGIVASRCIEHFHRPTIILTQSHDKAAGSARSVPGFDVYEAIEEC
ADLLEQFGGHTFAAGMTMAVDNIDAFRQKFEEVVSRRIKEEHLTPLVDIDMPMDFSEIND
KLVRILKQMGPFGPHNMQPTFMTEDVYLVGEPIIMKEKHLKIYVQQGRSGHTLQAVGFGF
AHMAKQLRPREPFSICYQVEQNFFNGNVSLQLMLKDIKCS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgatagcccagtccacccctccccctaaacgatggatttccaaacccttcccggattcg
acgcagcagcgggcggctattgcgtcgctgacgcagtcgctcaacgtgagtccgtttctg
gcgagtctgctcgttcagcgcggcattacttcgtttgaagaggctcgccagttcttccgg
cccgaaatcggtcatctgcacaaccccttcggcatgaaggacatggaccgggccattaaa
cgtctggaaaaggctatgctgcccgggcgcgaggagaagatactcatctacggcgactat
gacgtagacggtacaacctcggtggcactggtttacggctttctaaagaactatcacgct
aagatagattattatatcccagatcgctattcggagggttacggtatttcgcgtcagggg
attgagtgggcagcggcaaacgggtttacgctgatcattgccctcgactgcggcatcaaa
tccattgaacgcgtagccgaagcgaaagcgctgggtgtcgatttcatcatctgcgatcac
caccgccccggtgctgaactgcccgaagctgcggctgttctggaccccaaacgcgaggac
tgcgcttattcgtataaggagctgagcggctgtggcgtaggctttaaactccttcaggcc
ttttgcctgcgtaaggaaattccgctggagcagctgtacccgtatctggatctggtggtg
gtcagcatcgcgtcggacattgtaccggtgacgggcgagaaccgcgttctggcctattac
gggttaaaatatcttaacagccaaccccgcaccggcctgaaagcgttaattaaaatagcc
ggcttcagaagcgagctcgatattacgaacgtcgtgttcggactgggaccacggattaat
gcggccggccggattcagcacgcgaaggcagccgtacaactgctgctggcggaactggaa
gaagaagccgacgagtttgcaatggcgatcaataaacacaataacgaccgccgaaacttt
gacagcagcattaccgagcaggcactggagatgatccggaatagcgagacactgctgaac
gcgaaatcgaccgttctctacgacgccaactggcataagggcgtaattggaatcgttgcg
tcgcgctgcattgaacattttcaccggccaaccatcatcctgacgcagtcgcacgacaaa
gccgctggctcggcgcggtcggtgccggggtttgacgtgtacgaagccattgaagagtgc
gccgacctgctcgaacagtttggcgggcacacctttgcggctggcatgacgatggcggtg
gataatatcgacgcctttcgccaaaaattcgaagaggtggtttcgcgccggatcaaagaa
gaacacctgacgccgttggtagacattgatatgccgatggacttcagcgagatcaatgac
aagctggtgcggattctgaagcagatggggccctttggaccgcacaacatgcaaccgacg
ttcatgacggaggatgtctatctggtgggtgagccaattattatgaaagaaaagcacctg
aaaatctatgtgcagcagggccggtctgggcacacactccaggcggttggctttggtttt
gcccatatggccaaacagttacgcccccgcgagccgttttcaatctgctatcaggtcgaa
cagaatttcttcaacggaaacgtttcgctgcaattgatgttgaaggatataaaatgcagt
tag
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