Spirosoma taeanense: HNV11_23155
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Entry
HNV11_23155 CDS
T07080
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stae
Spirosoma taeanense
Pathway
stae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNV11_23155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stae03400
]
HNV11_23155 (mfd)
Enzymes [BR:
stae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNV11_23155 (mfd)
DNA repair and recombination proteins [BR:
stae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNV11_23155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
DUF3867
Motif
Other DBs
NCBI-ProteinID:
QJW92065
UniProt:
A0A6M5YDH1
LinkDB
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Position
complement(5568924..5572277)
Genome browser
AA seq
1117 aa
AA seq
DB search
MKPDELLSLYADDSFIKLLAEPFGRKPTGEPQRLQIKGLAGSLDAVLASAIFKSVGGNHL
YVLTDRDEAAYFFNDLQNLLGREVLLFPMSYKKPYQYEEVENANVLMRAEVLNKLNPAPK
DGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKLDTNFVSELLLNYEFEKTDFVYEAGQ
FSVRGGIIDVFSFASEFPFRIDLFGDEVESIRQFNPETQLSTEPVDFINIIPNIQTKLIE
ETREPFLDFLPEATTIWVKDVEFTLDIIEKSYEKAEQSFASVLAGSGGIQVISDPAELFE
TRRAFLNELKGFRTVEFGRKFYFKTEGRQQYNSKPQPSFNKDFKRLVDTLGDNQAKGYTN
IIAAESFKQLDRLRTIFEELDPFVKFQPMNIGLREGYIDDALKIACFTDHQIFDRYYKYR
VQDKFSKSKALTLRELKTLQPGDYVTHVDHGIGRFAGLEKVDNAGREQEAIRLIYRDNDI
LLVSIHSLHKIAKYSGREGGPPTMSKLGSQEWEQKKSKIRKQVKDIARELIALYAKRRTA
PGYAYSRDSFLQAELESSFLYEDTPDQAKATNDVKDDMEQPHPMDRLVCGDVGFGKTEIA
IRAAFKAVTDNKQVAVLVPTTILAMQHYKTFTDRMADFPVKIEYINRFRTPTQIKEILKG
VTSGEIGILIGTHRIVNKDIKFKDLGLLIIDEEQKFGVKTKDRLKEMRVEVDVLTLTATP
IPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHAFNEATIRDAISYEIRRGGQVFFVHNR
VNDIESIGNLIMRLVPEARIGVAHGQMEGDKLERMMTRFIEGDYDVLVSTNIIESGLDIP
NANTIIINNAHHFGLSDLHQMRGRVGRSNRKAFCYLITPPPSVLTADARKRLQTLEDFSD
LGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKILDEAVQELRENEFKDLFETK
PGELKVSLPDTVIETDLQVVIPERYVSNISERLALYTRLDNIQNNEELQAFRQEMLDRFG
PMPEEVENLIKMVNVRWKAERLYLEKLTLKNNILKGYFVSNGNDDFFKSDQFGKVIDYIK
RNPAKCSLKESKGRPIFTHSDVFSVEQLDEIMGAMTN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccagacgaattgctcagcctttatgctgacgatagctttataaaattactggcc
gaaccgtttggccgtaagcctaccggcgaaccccagcgcctgcaaatcaagggcctggcg
ggtagtctggatgcagttctggcgtcggctatatttaagtccgttggaggtaatcacctt
tacgtactgacggatcgcgacgaagccgcttacttcttcaacgatctgcaaaacctgctt
ggccgcgaggtgctgctgtttccaatgtcgtacaagaaaccgtatcagtacgaggaagtt
gagaacgccaatgtcctgatgcgggccgaagtacttaataagcttaacccggctccgaaa
gacggtttgctgatggtgacctacccggaagccttatcggaaaaggtcatcaacaaacgg
tcgttgcaggccaatacgctcaccattcgggtgggggagaagcttgataccaatttcgtg
tccgaactgctcctgaactacgaatttgaaaaaacggatttcgtctacgaagcaggccag
ttctccgtacgaggtggaatcattgatgttttttcgtttgccagcgagtttcccttccgg
attgatttgtttggcgacgaagtagaaagcatccgtcaattcaatccggagacgcagctt
tctaccgaaccggttgattttatcaacattatcccaaacatccagactaagcttatcgaa
gaaacccgcgagccatttctggatttcctgccggaagcaaccacgatttgggtgaaagat
gttgagtttacgctcgatatcatcgagaaatcatacgagaaagcagagcagagttttgcg
tcggtattggccgggagtggcggtattcaggtaatatcggaccccgccgagctgtttgaa
acgcgccgagcctttctgaacgagctgaaaggcttccggactgtagagtttggccgtaaa
ttttactttaaaaccgaaggtcgtcagcaatataattcaaagccgcagccgtcttttaat
aaggattttaagcgcttagttgatacactcggcgacaaccaggccaagggctacaccaac
atcattgcagctgaatcattcaagcagctcgaccggttacgaacgatttttgaggagctt
gatccgttcgtcaagtttcagcccatgaacattgggttgcgcgaaggctacattgacgac
gcgcttaaaattgcctgcttcacggatcaccagatttttgaccggtattacaaataccgc
gtccaggataaattctcgaagtcaaaagccctgacattacgtgagctgaaaacgctgcag
cccggcgattatgttacgcatgttgatcacggcatcgggcgctttgcgggattagagaag
gtcgacaacgctggccgcgaacaggaggccatacgcttgatctaccgcgataacgacatc
ctgctggtcagtatccacagtttgcacaagatcgccaagtacagcggccgggaaggcggt
cctccgaccatgagcaagctcggctcgcaggaatgggagcagaagaagtctaaaatcagg
aagcaggtcaaggacattgcccgcgaattgattgcgctgtatgccaaacgccggacagcg
ccgggctatgcgtacagccgcgacagctttctacaggccgaacttgaatcttcgttcctg
tatgaagacacgccggaccaggctaaagcgaccaacgatgtcaaggatgacatggagcag
ccacaccctatggaccggcttgtgtgtggtgatgtgggcttcggcaaaaccgaaattgcc
atccgggctgcatttaaggccgttacggataacaaacaggtcgccgtactcgtaccgacg
actatcctggccatgcagcattataagacctttacggatcgcatggccgactttccggtt
aagattgaatacattaaccggtttcgaacgcctacgcagatcaaggaaattctgaaaggt
gttacgtccggtgaaattggcattctgatcggtacccaccggatagttaataaagacatc
aaattcaaggacctgggccttctcattatcgacgaagagcagaagtttggcgtaaaaacc
aaagatcgcctgaaagagatgcgcgttgaggtggatgtgctgacactaacggctacgcca
attccacgaacgctccatttttcgctcatgggtgcccgcgatttgtcggttatcgctacg
ccaccacccaaccgtcagccggttacgaccgaggttcacgcgttcaacgaagcgaccatt
cgggatgccattagttacgagatccggcgtgggggacaggttttctttgtccacaaccgc
gtcaacgacattgagtcaatcggtaacctcatcatgcggctggtacccgaagcccgtatt
ggcgtagcgcatggacagatggaaggtgataaactggaacgtatgatgacccgattcatt
gagggcgattatgatgttctggtatcgaccaacatcattgaatcgggtctggatataccc
aacgccaacacaatcatcatcaacaatgcgcatcatttcggcttgtcagacctccaccag
atgcggggacgggttggccggtcgaaccggaaggcattctgctatctgataacgcccccg
ccttcggtgctaaccgccgatgcccgcaagcggctacagaccctcgaagatttctcagat
ctgggggagggattcaagattgccatgcgcgacctcgacatccggggggcgggtaaccta
cttggtgctgagcaaagtggtttcgtgaatgatctcggctttgagatgtaccacaagatt
ctggacgaagccgttcaggaattacgtgaaaacgaatttaaagacctgtttgaaaccaaa
cccggcgagttgaaggtatctttgccggatacggtcattgaaactgatttgcaggttgtt
attccggaacgttacgtatcgaacatctccgaacggctggcgctatacacccgcttagac
aatattcagaacaacgaagaactacaggcgtttcgacaggagatgctcgatcgctttgga
ccgatgccggaagaggttgaaaacctgatcaaaatggtcaacgtgcgctggaaagcagag
cgtttataccttgaaaaactgacgcttaagaataatatcctgaagggctacttcgtttct
aacgggaatgatgacttcttcaagtccgatcagtttggcaaggtaattgactacattaag
cgaaatccggccaaatgctcgttgaaagagtcaaaaggacgcccaatctttactcattcc
gacgtattttcagtcgagcaactggatgaaatcatgggcgcgatgacaaattaa
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