Spiroplasma taiwanense: STAIW_v1c00820
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Entry
STAIW_v1c00820 CDS
T02742
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stai
Spiroplasma taiwanense
Pathway
stai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAIW_v1c00820 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stai03019
]
STAIW_v1c00820 (rnr)
03016 Transfer RNA biogenesis [BR:
stai03016
]
STAIW_v1c00820 (rnr)
Enzymes [BR:
stai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STAIW_v1c00820 (rnr)
Messenger RNA biogenesis [BR:
stai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STAIW_v1c00820 (rnr)
Transfer RNA biogenesis [BR:
stai03016
]
Prokaryotic type
tRNA degradation factors
STAIW_v1c00820 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AGR40774
UniProt:
S5LSX6
LinkDB
All DBs
Position
81347..83443
Genome browser
AA seq
698 aa
AA seq
DB search
MKDLIIKKLNIQNKIHFNELFKFFSKDYEKLTNCLKEMQEENIIAWTKENVIYFIGEKYK
IGSIKINDKGFGFVKDFNKEDEDFFVPPNSLNNSISTDEVVFTIHKENDDRLKAKIEDIV
LRNKTFLIGEIQKSECGRFLDFIPNELWFKNYRIVMINAKDFKLEKDLILKVKILDVRDK
KLFVKIQKIIGNSNKATDRILSIAYEYDIKSEFSKNVINNANEVAKPINYNEPLIKRRLN
NLIKDKNLVTIDGEDSKDLDDAIYVEKTEKGYKLLVAIADVSYYVTPFSDLDNSALFRGN
SVYLANKVIPMLPEKLSNEVCSLNPNEEKLCMVAEVEFDFNGAIINKRVYESIMISKARL
TYKEVNELYKNNNSLIDKEIIDMLWIAKELHEIIDKERSERGSIEFDIAEPKIILDKDSN
VIDIIKRERGISEKLIENFMVSANECVASLIFDKELPFIYRNHDDPKEKNLLEWHSILKA
LGINVKLTELDKINPKTIKKALNQIENQISDETEREVINIILLKFMEKAAYELDNIGHFG
LASDCYTHFTSPIRRYSDLIVHRYLKQYLIDKDLREFKLEQNKKFILKACSIINDTERNA
VSAEREVNKVCMAEYMKSKLNQEYEGIIAAVLKFGVFVQLSNCVEGLIHISELPDFTFDE
KTNILVNKQNKIFRLGQKVKIKVKNADVKKRIIDFTLK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttaataataaaaaaattaaacattcaaaataaaattcattttaatgaactt
tttaagtttttttcaaaagattatgaaaaacttacaaattgcttaaaagaaatgcaagaa
gaaaatataatcgcttgaactaaagaaaatgttatatattttattggagaaaaatataaa
ataggaagtattaaaattaatgataaaggatttggatttgtaaaagacttcaataaagaa
gatgaagatttttttgttccaccaaattctttaaataactcaatttcaactgatgaagtt
gtatttacaattcataaggaaaatgatgatagacttaaagctaaaattgaagatatagtt
ttgagaaataagacatttttgattggggaaattcaaaaaagtgaatgtggaagatttcta
gattttattccgaatgagttatgatttaaaaattatagaattgtaatgataaatgcaaaa
gattttaaattagaaaaagacttaattttaaaagttaaaatacttgatgttagagataaa
aagttgtttgtaaaaattcaaaaaataattggtaattcaaataaagcgacagatagaatt
ttatcaatagcttatgaatatgatattaaatctgaatttagcaaaaatgttattaataat
gcaaatgaagtggcaaagccaattaattataatgaaccgttaataaaacgaagattaaat
aatttaattaaagataaaaatttagtaactattgatggagaagattctaaggatttggat
gatgcaatttatgttgaaaaaacagaaaaaggatataaattgttagttgctatagctgat
gttagttattatgttacacctttttcagatttagataattctgctttatttagaggaaat
tcagtatatcttgcaaataaagttataccaatgcttccagaaaaattatcaaatgaagtt
tgtagtcttaacccaaatgaagaaaaattatgtatggtagctgaagtggaatttgatttt
aatggtgcaattataaataaaagggtttatgaatcaattatgatatcaaaagcaagatta
acttataaggaagtaaatgaactttataaaaataataattcattaattgataaagaaatt
attgatatgctttgaattgcaaaagaattacatgaaattattgataaagaaagatctgaa
agaggctcaatcgaatttgatatagcggaaccaaaaataattttggataaagattcaaat
gtaattgatatcattaaaagagaacgaggaattagtgaaaaattaattgaaaattttatg
gtaagtgctaatgagtgtgtagcatcattaatttttgataaagaattaccttttatttat
agaaatcacgatgatccaaaagaaaagaatcttttggaatgacattcaattttaaaagca
ctaggtattaatgttaagttaactgagttggacaaaattaatccaaaaactataaaaaaa
gctcttaatcaaattgaaaatcaaattagtgatgaaactgaaagagaagttataaatata
atattgttaaaatttatggaaaaggcagcgtatgagcttgataatattggtcattttgga
ttagcaagtgattgttatactcactttacttctccaattagaagatatagtgatttgatt
gttcatagatatttaaaacaatatttgattgataaagatttaagagaatttaaattggaa
caaaacaaaaaatttattttaaaagcatgtagtataataaatgatactgaaagaaatgct
gtctcagccgaaagagaagtcaataaagtttgtatggcagagtatatgaaatcaaaactt
aatcaggaatatgaaggaattattgcagcagttttaaaatttggagtatttgttcaacta
tccaattgtgttgagggtttaattcatatttctgaattaccagattttacttttgatgag
aaaacaaatatcttagtgaataaacaaaataaaatttttagacttggacaaaaagtaaaa
ataaaagttaaaaatgctgatgtaaaaaaaagaataattgattttactttaaaatag
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