Stanieria sp. NIES-3757: STA3757_00220
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Entry
STA3757_00220 CDS
T05130
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stan
Stanieria sp. NIES-3757
Pathway
stan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STA3757_00220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stan03019
]
STA3757_00220
03009 Ribosome biogenesis [BR:
stan03009
]
STA3757_00220
Enzymes [BR:
stan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
STA3757_00220
Messenger RNA biogenesis [BR:
stan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STA3757_00220
Ribosome biogenesis [BR:
stan03009
]
Prokaryotic type
rRNA processing factors
STA3757_00220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
zf-ChsH2
TMEM132_C
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
BAU62672
LinkDB
All DBs
Position
21716..23680
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AA seq
654 aa
AA seq
DB search
MPKQIIIAEQHHIAAVFWEDQIQELIVATGNQQVSDIYLGAVENVIPGIDAAFVNIGDAE
RNGFIHVTDLGPLRLKKTAGAITELLTPQQTVLVQVMKEPTGNKGPRLTGNITLPGRYLV
LMPYGKGVKLSRRIKDDNERNRLRALAILIKPAGMGLLVRTEADGKAEEAIMEDLEFLQK
QWESIQYQAASTRPPALLNRDDDFIQRVLRDMYSADVNSIVVDSQAAVKRVKQHLTNWGG
GRFPQGVFIDHHRERQAILEYYRVNAAVREALKPRVELPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNSEAATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKAL
KADKARPQIAQLSELGLVELTRKRQGKNIYELFGQTCPSCGGLGHLVHLPGKPEGESLES
PPITPPIAIPTLPYTQENNFSDYSLDLGYDPSPSPPELLNHPNYQEQGNNNRRRRRRRLN
DILLKDEQTELNPVVITRDFEVDTPNFVPEERKSRVQSNRPSRRDETNLEKVSVEMTDLE
QEVYALMGISPLIRLEREFKDPKSVLVLIQNSNDGGQATGITETESSQESVTEPEVMNET
EIVTPPELKIEVTTEAEPETEINAETETETETEENNNARRRRRRRSSAQTELSV
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattattgcggaacagcatcatatcgccgccgttttttgggaagat
caaattcaggaattgattgttgccacaggcaatcaacaggtgagcgatatttatcttggt
gcagttgaaaatgttattcctggtatagatgctgccttcgttaatataggcgatgcggaa
cgcaacggttttattcatgttacagatttaggacctttacgtttaaaaaaaactgccgga
gcaattactgaactattaactccacaacaaacagttttggttcaggtaatgaaagaaccc
actggaaataaaggaccaagactgactggtaatatcactttgccaggacgatatttagtt
ttaatgccttacggtaagggagtcaaactttcacgacgtattaaagatgacaacgaacgt
aaccgtttacgcgctctagctattctcattaaaccggctggtatgggtttactagtgaga
accgaagccgacggtaaggcggaagaagccattatggaagatttagaatttctacaaaaa
cagtgggaatcaatccaatatcaagcggcttctaccagacctccagcactgttgaatcga
gatgacgatttcattcagcgtgttttacgagatatgtattcggctgatgttaatagcatc
gtggttgattcacaagcagcggtaaaacgagttaaacaacatttaactaattggggtggt
ggtcgttttcctcaaggagtttttatcgatcatcatcgagaacgtcaagcaatcttagaa
tattatcgggtcaatgcagcagttcgtgaagctctaaaaccgagagtagagttaccatcg
ggtggctatattatcattgaacctaccgaagcattaactgttattgatgtaaactctggc
tcttttactcgctctgctactgctcgtgaaactgttctctggacgaatagcgaagctgca
actgaaattgctcgtcaattacgtctgcgtaatattggtggtgtaatcattgtcgatttt
atcgatatggactcacgaagagaccaactcaaactgttagaacattttaataaagctctc
aaggcagataaagctagacctcaaattgctcaactttccgaacttggtttagtagaacta
actcgtaaacgccaagggaaaaatatttacgaattatttggtcaaacttgtcctagttgt
ggtggtttaggacatttagtccatctaccaggcaaacctgaaggagaatctttagaaagt
ccaccgattactccaccaatagcaattcctactttgccttatactcaagaaaataatttt
tctgattattcgcttgatttaggttacgaccctagtccttcccctccagaattactcaat
catcccaactatcaagagcagggaaataataatcgtcgtcgtcgtcgtcgtcgtcttaat
gacattttgctcaaagacgaacaaactgagttaaatcctgtcgttataactcgcgatttt
gaggtagatacgcctaattttgtacctgaagaacgtaaatctagggtgcaatcaaatcgt
ccttctcggcgagatgaaactaatttagaaaaagtttctgtagaaatgactgatttagaa
caggaagtttatgctttgatgggcatatctcctttaattcgtttagaacgagaatttaaa
gatcctaaatcggttttagttttaatccaaaattctaatgatggcggtcaagcaactggt
ataactgaaacagaatctagccaagaatctgttactgaaccagaagtaatgaacgaaact
gaaatagtaactcctcccgaattaaaaatagaagtaacaacagaggcagaacccgaaaca
gaaataaacgcagaaacagaaacagaaacagaaacagaagaaaataacaatgcgcgccgt
cgtcgccgtcgtcgttcatcggcacaaacagagttatcagtttaa
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