Stanieria sp. NIES-3757: STA3757_14750
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Entry
STA3757_14750 CDS
T05130
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stan
Stanieria sp. NIES-3757
Brite
KEGG Orthology (KO) [BR:
stan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stan03016
]
STA3757_14750
Enzymes [BR:
stan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
STA3757_14750
Transfer RNA biogenesis [BR:
stan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
STA3757_14750
Prokaryotic type
tRNA splicing ligases
STA3757_14750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAU64106
LinkDB
All DBs
Position
1618709..1620169
Genome browser
AA seq
486 aa
AA seq
DB search
MAAIDVLTRISDVIWEIPTSYKEGMRVPARIYGTKKLIQEMDDTVYDQITNVATLPGITK
YALCMPDAHFGYGFPIGGVAAMDVEKGGVISPGGIGFDINCGMRLVTTNLTYKEVKPHLK
QLVDKLYDRVPAGVGSTGFVKLSRNDFRQVVEQGAQWCIRNGYGWEEDLELMEEQGCLQG
ADADKISDKAIDRGIHQIGTLGSGNHYLEIQVAKRENIFDKTLAKKMGIIKPDQVVVMFH
CGSRGFGHQVATDYLQRFLKVMDSKYGIKILDRELACAPFDSPEGQAYFSAMKCGINMSF
ANRQVILHRIREVFSQVFGKSAEDLGMHMVYDVAHNTAKLEKHLVDGKERSLLVHRKGAT
RAFGPEMTDLPERYQETGQPVIIGGSMETGSYLLTGVPTGNATFYSTAHGSGRTMSRTKA
RKTWRGEVLQKEMQQKGIYVRSTSYSGLAEEAGGAYKDVDEVIAAAEMAGISKRVAKLTP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgatcgatgttttaaccagaatttctgacgtaatttgggaaattcccacatcc
tataaagaaggaatgcgcgtacctgcccgaatttatggcaccaagaaactgatccaagaa
atggatgatacggtttacgaccaaattactaatgtcgctacgctccctggcatcaccaaa
tatgcactgtgtatgcccgacgcacactttggctatggatttcctatcggaggcgtagca
gcgatggatgtagaaaaaggtggggtaatttctccaggaggtatcgggtttgatatcaat
tgcggaatgcggttagtgacgacgaatttgacctacaaggaggttaaaccgcatctcaag
caactggtagataagctgtacgatcgcgtccccgcaggggtgggtagcactggttttgtc
aagctttctcgcaacgattttcgtcaagtggttgagcagggcgcacaatggtgtatccgt
aatggttacggttgggaagaagacctagaattgatggaagaacaaggctgtttgcagggt
gcagatgctgacaaaattagcgacaaggcgattgatcgcggaattcatcaaattggcaca
ttgggttctggcaaccactatttagaaatacaagtagcaaagcgagaaaacatttttgac
aaaaccctagccaagaaaatgggtattattaagccagaccaagtggtggtaatgtttcat
tgtggcagtcgtggttttgggcatcaagtggcaaccgattacttgcagcgttttctcaag
gtaatggatagtaagtatggcatcaaaattctcgaccgagagcttgcctgtgcgcctttt
gattctcctgaaggacaggcatatttttcggcaatgaagtgtggcattaatatgtccttt
gccaatcgtcaagtaattttgcatcgcattcgagaagtattttctcaagtgtttggcaag
tcggcagaagatttaggaatgcacatggtctatgatgtggcacacaatactgctaagtta
gaaaagcacctagtcgatggcaaagagcgatcgcttttggttcatcgcaaaggagcaacc
cgtgcttttggcccagaaatgaccgatttgccagagcgatatcaagaaacgggtcagcct
gtgattattggtggcagcatggaaacaggatcatacttactgacaggcgttcctacaggc
aatgcaactttttatagtactgcacacggcagtggacgcaccatgagccgaaccaaagct
cgtaaaacttggcgcggagaagtccttcaaaaggaaatgcagcaaaaaggtatttatgtt
cggagtacctcttattcaggactggcagaagaagctggaggagcttacaaagatgtggat
gaagtgatcgcagcagcagaaatggcaggtatcagtaaacgggttgccaagttaacgccg
atcggaaatatcaaggggtag
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