Stanieria sp. NIES-3757: STA3757_35650
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Entry
STA3757_35650 CDS
T05130
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
stan
Stanieria sp. NIES-3757
Pathway
stan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STA3757_35650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stan03019
]
STA3757_35650
03016 Transfer RNA biogenesis [BR:
stan03016
]
STA3757_35650
Enzymes [BR:
stan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
STA3757_35650
Messenger RNA biogenesis [BR:
stan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STA3757_35650
Transfer RNA biogenesis [BR:
stan03016
]
Prokaryotic type
tRNA degradation factors
STA3757_35650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
BAU66162
UniProt:
A0A140K9Y5
LinkDB
All DBs
Position
complement(3899105..3901261)
Genome browser
AA seq
718 aa
AA seq
DB search
MEEFDQSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATKAEGREGIDFLPLIVD
YEERLYAAGRIPGGFLRREGKPPERATLTSRLIDRPLRPLFPGWLRDDIQIVATTLSMDH
EVPPDILAVTGASVAVLLAQIPFYGPMAAVRVGLVGDDFIINPTYQEIEQGDLDLVVAGS
PDGVVMVEARANQLPEQDIIEAIDFGYEAVQELIQAQRQLIQQLGIEMPTIESPVVDETL
TNFISDRASEAIKQVLSQYDFDKNARDAALDEIKKTKIEEVIAELPEEDPLKIATSENPK
AIANEFKAVTKKLMRAQIIEQNVRVDGRKLDQVRPISCRVGLLPQRVHGSGLFRRGLTQV
LSIATLGTSGDAQDLADDLHPEDEKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAER
ALVPVLPPQEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLI
KENDEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDIVAKAIQQAKPA
RMHILEEMLKTIAEPRSELSPYAPRLLTIKIDPELIGLVIGPSGKTIKGITEQTGAKIDI
EDDGTVVIAAVEAEKAERARSIISGMTRKLNEGDVYAGRVTRIIDIGAFVEILPGKEGMI
HISQLAEGRVGKVEDEVAVGDEIVVKVRGFDNKGRLNLTRLGIHPDEAAAARAAVAVK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattcgatcagtcaatatctttcgatgggagggatattagacttaaagtaggc
ttgctcgcgccacaagcaggcggttctgttttaattcaatcaggagatacagcagtatta
gttacggcaactaaagcagaaggaagagaaggaattgattttttacctctcatcgttgat
tacgaagaaaggttgtatgcagcaggtcgtattccaggcggatttttaagaagagaagga
aaacctccagaaagagcaactcttaccagtagattaatcgatcgccctttacgtcctctt
tttcctggttggttgagagatgatattcaaattgttgctacaacattatcgatggatcac
gaagtaccccctgatattttggcagtaacaggtgcttccgtagctgttttattggcgcaa
atacccttttatggccccatggcagccgtgagagttggtttagtaggcgacgattttatt
atcaatcctacttatcaagaaattgaacagggagatttagatttagttgtagctgggagt
cccgacggtgtagtgatggttgaagccagggcaaatcaattaccagaacaagatattatt
gaagcgattgattttggttacgaagcggtacaagaattaattcaagcgcaaagacaacta
attcaacagttgggtattgaaatgccaacgattgaatcacctgttgtagatgaaaccttg
acgaattttattagcgatcgcgcatccgaagccatcaaacaagttctttctcaatatgat
ttcgataaaaatgctcgtgacgcagctttagatgagatcaaaaagaccaaaattgaagaa
gtaatcgccgaactaccagaagaagacccgctcaaaattgcgacgagcgaaaatcccaaa
gcgatcgccaatgaatttaaagcggtcactaaaaaattaatgcgggcgcaaattatcgaa
caaaatgttcgagttgacgggcgtaaattagaccaagttagacctatttcttgtcgagta
ggactactaccacagcgcgttcacggtagtggtttatttagaaggggattaactcaggtt
ctttccattgctaccttgggaacttcaggagatgctcaagatttagctgacgaccttcat
cccgaagacgaaaaacgctatcttcatcattacaattttccgcctttttctgtgggagaa
actaagccaatgcgctctccaggacgcagagaaataggtcatggtgccttagcagaacgt
gcgcttgtacctgtattaccacctcaagaagaatttccctatgtagtcagagtcgtttca
gaagtattatcttccaacggttcgacttcaatgggttctgtttgcggatctactctggca
ttgatggatgcaggtgtaccaattactaaacccgttagtggtgcagcaatgggtttaatt
aaagaaaacgacgaagttagaattcttactgatattcaaggaattgaagacttcttagga
gatatggacttcaaagttgcgggtacagacacagggattaccgcgctacaaatggatatg
aaaattacaggcttatcaatggatatagtagctaaagctatccaacaagctaaacctgca
agaatgcatatcctggaagaaatgctcaaaacgatcgctgaacctcgttcagaattgtct
ccttatgcaccaaggttactaacgattaaaatcgatcctgaactaattggtttagtgatt
gggccttctggtaaaacaattaaaggaattaccgaacaaacaggagcaaaaattgacatt
gaagatgacggaacagtggttattgcagccgttgaagccgaaaaagctgaacgagccaga
agtatcatctctggtatgactcgtaaattaaatgaaggggatgtttatgctggcagagtt
acccgaattattgacattggagcttttgtagaaattctgcctggtaaagaagggatgatt
catatttctcaactagcagaaggtagagtcggcaaagttgaagacgaagtagctgtaggg
gatgaaatcgtagttaaagtcagaggatttgataataaaggtcgtctgaatttgactcga
ttgggcattcaccccgacgaagcagcagcagctagagcagccgttgctgttaaataa
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