Starkeya sp. ORNL1: G3545_00010
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Entry
G3545_00010 CDS
T06785
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
star
Starkeya sp. ORNL1
Pathway
star02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
star00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3545_00010 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
star03021
]
G3545_00010 (rpoD)
Transcription machinery [BR:
star03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3545_00010 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QJP12184
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Position
2229..4232
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AA seq
667 aa
AA seq
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MAKQAAEATEAPEKDGDTPDSPLLDLSDSAVRKMIKLAKKRGYVTYDELNEVLPSDQNTS
DQIEDIYAMLNEMGINVVEAEEAEAEEAEEGAATTEAADDEEESGGEIAEAAPRAVVRSE
TKSEPGERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAII
IWRDELVEGKVLLRDIIDLEATYAGPEGKNAPIVEGGALAPEAEEEREPTIGESIAADDE
DDMENSLSLAAMEAEIKPKVLETFDRIADAYKKLRRLQDQNVESKLKNESLSPSQDRKYK
KLKDDLIIDVKSLSLNQARIDNLVEQLYDINKRLVSLEGRLMRLAESFGVSREDFLKQYQ
GNELDPKWVNRVKNLTSRGWKGFVGQELDGIRDLRSEIHALATETGLEILEFRKIVQMVQ
KGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEK
LGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTR
VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRK
LRSFLDN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaggcagcggaagcgacggaagccccggaaaaagacggcgataccccggac
agcccgttgctcgatctctcggattccgctgtccggaagatgatcaagctcgccaagaag
cgtggctatgtcacctatgacgagctgaacgaggttctgccttccgaccagaacacctcc
gaccagatcgaagacatctacgcgatgctcaacgagatgggcatcaatgtcgtcgaggcc
gaggaggccgaggccgaggaggctgaggaaggcgccgccaccactgaagcggcggatgac
gaggaagagagcggcggcgagatcgccgaggccgcgccgcgcgccgtggtgcgctccgag
accaagtccgagccgggcgagcgcaccgacgatccggtgcgcatgtatctgcgcgagatg
ggctcggtcgaactgctgtcccgcgagggcgaaatcgccatcgccaagcgcatcgaggcc
ggccgcgaggcgatgatcgcgggcctgtgcgaaagcccgctaaccttccaggccatcatc
atctggcgcgacgaactggtggagggcaaggtcctcctgcgcgacatcatcgatctcgaa
gccacctatgccggccccgagggcaagaacgcgcccatcgtcgagggcggcgcgctggca
cccgaggccgaggaggagcgcgagccgaccatcggcgagagcattgccgccgacgacgag
gacgacatggagaattccctgtcgctcgccgccatggaggccgagatcaagccgaaggtg
ctggagaccttcgaccgcatcgccgacgcctacaagaagttgcgtcgcctgcaggaccag
aacgtcgaatccaagctcaagaatgagagcctgtcgccgtcccaggaccgcaagtacaag
aagctgaaggacgacctgatcatcgacgtgaagtcgctgtcgctgaaccaggcgcgcatc
gataacctcgtcgagcagctctacgacatcaacaagcgcctcgtctcgctcgagggccga
ctgatgcgccttgccgagagcttcggcgtctcgcgcgaggacttcctcaagcagtaccag
ggcaacgaactcgacccgaaatgggtcaaccgcgtgaagaacctcacctcgcgcggctgg
aagggctttgtcggccaggagctcgacggcattcgcgacctacgctcggagatccacgcg
ctcgccaccgagaccgggctggagatcctcgaattccgcaagatcgtgcagatggtgcaa
aagggcgagaaggaagcccggcaggcgaagaaggaaatggtggaggcaaacttgcgcctc
gtcatctccatcgccaagaaatacaccaatcgcggcctgcaattcctcgacctcatccag
gaggggaacatcggcctgatgaaggcggtcgacaagttcgagtaccgccgcggctacaag
ttctcgacctatgccacctggtggatcaggcaggccatcacccgctcgatcgccgaccag
gcccgcaccatccgcatcccggtgcacatgatcgagacgatcaacaagatcgtgcgcacc
tcgcgccagatgctgcacgagatcggtcgcgagccgaccccggaggaactggccgagaag
ctcggcatgccgctggagaaggtacgcaaggtcctgaagatcgccaaggagccgatctcg
ctggagactccgatcggcgacgaagaggacagccatctcggcgacttcatcgaggacaag
aacgccatcctgccgatcgacgccgcgatccagtccaacctgcgcgagaccacgacgcgc
gtgctggcctcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggc
atgaacaccgaccacacgcttgaagaggtcggccagcagttctcggtcacccgcgaacgc
atccggcagatcgaggccaaggcgctgaggaagctcaagcatccgtcacggtcgcgcaag
ctccggagcttcctggataattga
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