Starkeya sp. ORNL1: G3545_04205
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Entry
G3545_04205 CDS
T06785
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3545_04205 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
star03019
]
G3545_04205 (rnr)
03016 Transfer RNA biogenesis [BR:
star03016
]
G3545_04205 (rnr)
Enzymes [BR:
star01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G3545_04205 (rnr)
Messenger RNA biogenesis [BR:
star03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3545_04205 (rnr)
Transfer RNA biogenesis [BR:
star03016
]
Prokaryotic type
tRNA degradation factors
G3545_04205 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QJP17470
LinkDB
All DBs
Position
876990..879242
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AA seq
750 aa
AA seq
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MPTKEALTAFIAEHGGDVGKRDISRAFGLDGQDRIALKAMLRELKGEGVVEGKRRRLHVP
GALPAVVMSEIVERDEDGELIAVPIDWDEAEHGDPPRIMVKLARRGRLAGPAPAIGDRVL
LKTEEIPEADGHIRHTGRVLKLVEKARAQVLGIFRKDRQGGGRLIPVDKKNMGRELIIPP
DFENGAEEGDLVAVEIVRHHAYGLPTAKVKERLGSLATEKAVSLIAIHAHAIPHVFRRET
LAEADAAKPATLAGREDWRALPLITIDPPDAKDHDDAVHAVADEDPENKGGFIVTVAIAD
VAWYVRPGSSLDREAVVRGNSVYFPDRVVPMLPERISNDLCSLRPLEDRPALAVRMVIAA
NGRKKRHTFHRIMMRSAAKLAYAQAQDAIEGRTDETTAPLLNDVLRPLYAAYAAVKKARD
AREPLELDLPERKILLKPDGTVDKVVVPERLDAHRLIEEFMILANVAAAETLEEKRIPLV
YRVHDSPSLEKFSSLREFLKTLDIALPKTDTIRPSHFNAILARAEGTELSPLVNQVILRS
QAQAEYANENYGHFGLHLKRYAHFTSPIRRYADLIVHRALIRALDLGRDGLPESTTPEGL
AEVAARISAAERRAMSAERETIDRLIAHHMAEQIGATFKGRIAGVTRAGLFVALDDTGAD
GFIPAATLGQDYYRYEESRHALVGERTGEVHRLGDRVEVKLVEAAPVAGALRFELLSEGA
YVAGAGRTRSRGGRREESRPKTGRRRYGPH
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
ctgccgaccaaggaggcgctgaccgccttcatcgcggagcatggcggcgatgtcggcaag
cgcgacatctcccgcgccttcgggctcgacgggcaggaccgcatcgcgctgaaggcgatg
ctgcgcgaattgaagggcgagggcgtcgtcgagggcaagcggcgccggctccacgtgccg
ggcgccctgcccgcggtcgtcatgtccgagatcgtcgagcgcgacgaggacggcgaactg
atcgcggtaccgatcgactgggacgaggccgagcacggcgatcccccacgcatcatggtc
aagctcgctcgccgcggccgcctcgccggtccggcgccggcgatcggcgaccgcgtgctg
ctgaagaccgaggagatcccggaagccgacggccatatccgccataccggccgggtgctg
aagctggtcgagaaggcgcgcgcgcaggtgctcggcatcttccgcaaggaccgccaaggt
ggcgggcgcctcatcccggtcgacaagaagaatatgggccgcgagctcatcatcccgccg
gatttcgagaacggcgccgaggaaggcgacctggtggcggtggagatcgtgcgccaccat
gcctatggcctgccgaccgccaaggtgaaggagcggctcggctcgctcgccaccgagaag
gcggtgagcctgatcgccatccacgcccacgccatcccccacgtgttccgccgcgagacg
ctggcggaagccgacgccgccaagccggcaacgctggcggggcgcgaggattggcgcgcg
ctgccgctcattaccatcgaccctcccgacgccaaggatcatgacgacgccgtgcatgcg
gtggcggacgaggatccggagaacaaaggcggcttcatcgtcaccgtcgccatcgccgat
gtcgcctggtatgtgcggcccggctcgtcactcgaccgcgaggcggtggtgcgcggcaat
tcggtgtatttccccgaccgcgtcgtgccgatgctgcccgagcgcatctccaacgacctg
tgctcgctgcgcccgctggaagaccggccggcactcgccgtgcgcatggtgatcgcggcg
aacgggcgcaagaagcgccataccttccaccgcatcatgatgcgctcggcggcgaagctc
gcttatgcgcaggcgcaggacgcgatcgaagggcgcaccgacgagaccaccgcgccgctg
ctcaatgacgtgctgcgcccgctctatgctgcctatgccgcggtgaagaaggcgcgcgat
gcccgcgagccgctggagctcgacctgcccgagcgcaagatcctgctgaagccggacggc
acggtcgacaaggtggtggtgccggagcggctcgacgcgcaccggctgatcgaggagttc
atgatcctcgccaatgtcgccgccgccgagacgctggaggagaagcgcatccccctcgtc
tatcgggtgcatgactccccctcgctggagaagttctcctcgctgcgcgaattcctcaag
acgctcgacatcgcgctgccgaagaccgacaccatccggccctcgcacttcaacgccatc
ctcgcccgggccgaaggcaccgagctgtcgccgctggtcaaccaggtgatcctgcgctca
caggcgcaggccgaatacgccaatgagaattacggccatttcggcctgcatctgaagcgc
tatgcgcacttcacctcgccgatccgccgctatgccgatctcatcgtgcaccgcgctttg
atccgcgcgctcgatctcggccgcgacggactgccggagagcaccacgccggaggggctc
gccgaggtcgccgcgcgcatctccgccgccgagcgccgggcgatgtcggccgaacgcgag
accatcgaccggctgatcgcccaccatatggcggagcagatcggcgccaccttcaagggc
cgcatcgccggggtgacgcgggcgggacttttcgtcgcgctcgacgataccggggcggac
ggcttcataccggcggcgacgctgggccaggactattaccgctatgaggaatcccgccac
gcgctggtcggcgagcgtaccggcgaggtgcaccggctgggcgaccgagtggaggtaaag
ctggtcgaggcggccccggtcgccggcgcgttgcgatttgagcttctatccgagggcgcc
tatgtagcgggcgcgggccgtactcgctcgcgcggcggacgccgcgaggagagccggccg
aagaccgggcgccgccgctacggtccgcattga
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