Starkeya sp. ORNL1: G3545_04650
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Entry
G3545_04650 CDS
T06785
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3545_04650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
star03021
]
G3545_04650
03400 DNA repair and recombination proteins [BR:
star03400
]
G3545_04650
Enzymes [BR:
star01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3545_04650
Transcription machinery [BR:
star03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3545_04650
DNA repair and recombination proteins [BR:
star03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3545_04650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF211
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
QJP13007
LinkDB
All DBs
Position
complement(949358..950374)
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AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPEKLEVAAGSDPKRLATVIAEPLERGFGQTLGNALRRILLSSLQGAAVT
SVHIDGVLHEFSSIPGVREDVTDIVLNIKDIAIKMQGEGPKRMVVKKQGPAVVTAGDIQT
VGDVQVLNPELVLCTLDDGAEIRMEFTVDTGKGYVAADRNRPEDAPIGLIPVDSLYSPVK
KVSYKVENTREGQILDYDKLTLSIETNGSVGPEDALAYAARILQDQLEIFVNFEEPKREA
ESPAMQELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLASMGLHLGMEVPGWPPENIEDLAKRFEDHY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgattcagaagaactggcaagagctcatcaagccggaaaagctcgaggtcgctgccggc
agcgatccgaagcgcctcgccaccgtgatcgccgaaccgctggagcggggcttcggccag
acgctcggcaacgcgctgcgccgcatcctgctgtcgtccctccagggcgcagcggtgacg
tcggtgcacattgacggcgtgctgcacgagttctcctcgatccccggcgtgcgcgaggac
gtgaccgacatcgtcctcaacatcaaggacatcgccatcaagatgcagggcgaaggcccg
aagcgcatggtggtgaagaagcagggtcccgccgtcgtcaccgccggtgacattcagacc
gtcggtgacgtgcaggtgctgaaccccgagctcgtgctgtgcacgctcgacgacggcgcc
gagatccgcatggaattcaccgtcgacaccggcaagggctatgtcgcggctgaccgcaac
cgcccggaagacgcgccgatcggcctgatcccggtcgacagcctctattcgccggtgaag
aaggtctcctacaaggtcgagaacacccgcgagggccagatcctcgactatgacaagctg
acgctctccatcgagaccaacggctcggtcggccccgaggacgcgctcgcttatgccgcg
cgcatcctgcaggaccagctcgagatcttcgtgaactttgaggagccgaagcgcgaggcc
gagagccccgccatgcaggagctgcccttcaacccggcgctcctcaagaaggtggacgag
ctggagctctccgtgcgctccgccaactgcctgaagaacgacaacatcgtctatatcggc
gacctgatccagaagaccgaggcggagatgctccgtaccccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagttctcgccagcatgggcctgcatctcggcatggaagtgccg
ggctggccgcccgagaacatcgaagacctcgccaagcgcttcgaagatcattactga
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