Starkeya sp. ORNL1: G3545_05730
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Entry
G3545_05730 CDS
T06785
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3545_05730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
star03019
]
G3545_05730
03009 Ribosome biogenesis [BR:
star03009
]
G3545_05730
Enzymes [BR:
star01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G3545_05730
Messenger RNA biogenesis [BR:
star03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3545_05730
Ribosome biogenesis [BR:
star03009
]
Prokaryotic type
rRNA processing factors
G3545_05730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QJP13190
UniProt:
A0A858WTW2
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All DBs
Position
1175163..1178060
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AA seq
965 aa
AA seq
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MANKMLIDATHPEETRVVVVRGSRVEEFDFEAANRKPLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERQQRRDAEEENEDKPRGGRPRRQRSA
SPKRSDGDESVSESPEGTDPGDGEVSEAAEAAGETENEAPRPRPSRHKPSSDDEGGGGVE
EVAGEEEVVEQVGSDDAMEEVPERGPQRRARSYKIQEVIKRRQIMLVQVVKEERGNKGAA
LTTYLSLAGRYSVLMPNTARGGGISRKITSAEDRKRLKEVASDLDVPEGMGVILRTAGAN
RTKTEIKRDFEYLLRLWENVRELTLASTAPSLVYEEGSLVKRSIRDLYNKDIEEVLVSGD
EGYREAKDFMRMLMPSHAKNVKPYRDPQPVFARFGVESQLDAMFLPIVQLRSGGYIVINP
TEALVSIDVNSGRSTREHNIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRN
NRAVERKLKDCLKNDRARIQLGRISHFGLMEMSRQRIRTGVLESSTEVCPHCGGTGHVRS
VSSVALQLLRAVEDYLLKSNAYNVIVRTRAENAIYVLNHKRAHLHELEERFGVAIVVAAD
NTLAGYTPFAIDRGEPVPNPIPMPRAPVAVVEAIEEEEEPVIEAEEVEDEVVVAEAAAPA
SEAREGAPQPRGEGEEGEGANRRRRRRRRRRRGGGGENGQRPGSEGQQDGYEAGGADDGE
DDDDGEDDADAGIESGVTADAPAADEAAPGLTTSFVPPSDPQPDYYAPTPDEASAPAPVE
APPVETTPVAEVPAEAAPAEATSAEEAPVEGAPRKRARRATTRRPRGAKAEAEAAAAVAS
GEAPAASEATATEAPAPAVEDAKPAPRRRRSTVREPAPLLNSDTSASVTQESLPLSVEPQ
QTPVETPVEPAPAPVESAPEPAASHEAPEPQAAEPAPAAPEAPAAQEQDDRPRRTGWWQR
KLFGV
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctcatcgacgccacccatccggaagagacccgggttgtggtggtg
cgcggcagccgggtcgaagagttcgacttcgaggccgccaatcgcaagccgctgcgcggc
aacatctatctcgcgaaggtaacgcgggtcgagccgtcgctgcaggccgccttcgtcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgagatccatcccgactattaccag
atcccggtcgccgaccggcaggcgctgcttgccgaggaggagcgccagcagcgccgcgac
gccgaggaggagaacgaggacaagccgcgcggcggtcgtccgcgccgccagcgctcggcc
agcccgaagcgcagcgacggcgatgaaagcgtctcggaatcgcccgaaggcacggacccc
ggcgacggcgaagtttcggaagccgccgaggctgccggcgagaccgagaacgaggccccc
cgtccgcgtccctcgcgccacaagccgtcctccgacgatgaaggcggcggcggggtcgag
gaagtcgccggcgaggaagaggtggtcgagcaggtcggctccgacgacgccatggaagag
gtcccggagcgcggcccgcagcgccgcgcccgttcctacaagatccaggaagtcatcaag
cgccggcagatcatgctggtgcaggtggtcaaggaagagcgcggcaacaagggcgcggcg
ctcaccacgtacctctcgctcgccggccgctattcggtgctgatgcccaacaccgcgcgc
ggcggcggcatctcccgcaagatcacctcggccgaggaccgcaagcggctgaaggaggtc
gcctccgacctcgacgtgccggagggcatgggcgtcatcctgcgcaccgccggtgccaac
cgcaccaagaccgagatcaagcgcgacttcgagtatctgctgcggctctgggagaatgtg
cgcgagctgacgctggcctcgaccgcgccatcgctggtctatgaggaaggctcgctggtc
aagcgctcgatccgcgacctctacaacaaggacatcgaggaagtcctggtctccggcgat
gaaggctatcgcgaggccaaagacttcatgcgcatgctcatgccaagccatgccaagaat
gtgaagccctatcgcgacccgcagccggtgttcgcccgcttcggcgtggagagccagctc
gacgcgatgttcctgccgatcgtgcagttgagatcgggcggctacatcgtcatcaatccg
accgaggcgctggtctccatcgacgtgaactcgggccgctcgacccgcgagcacaatatc
gaggacacggcgctgaagaccaacctggaggcggctgaagaagtcgcccgccagttgcgc
ctgcgcgaccttgccgggctgatcgtcatcgatttcatcgacatggacgagaagcgcaac
aaccgggcggtcgagcgcaagctgaaggattgcctgaagaacgaccgcgcccgcatccag
ctcggccgcatttcgcatttcggcctgatggagatgagccgccagcgcatccgcaccggc
gtgctggaaagctccaccgaagtctgcccgcattgcggcggcaccggccatgtgcgctcg
gtgtcctcggtcgcgctgcaattgctgcgggcggtggaagattatttgctcaagtccaac
gcctacaacgtcatcgtgcgcacccgcgccgagaacgcgatctatgtgctgaaccataag
cgcgcgcatctgcacgagcttgaggagcgcttcggcgtcgccatcgtggtggcggcggac
aatacgctcgccggctacacaccattcgcgatcgatcgcggcgaaccggttccgaacccg
atcccgatgccgcgcgcgccggtcgccgtggtcgaggcgatcgaggaagaggaagagccg
gtcatcgaggccgaagaggtcgaggacgaggtggtggttgccgaggctgccgcgccggct
tccgaggcccgcgagggcgccccccagccgcgtggcgagggcgaggaaggcgaaggcgcc
aatcgtcgccgccgtcggcgccgtcggcgccggcgtggcggtggcggcgagaacggccag
cgtcccggctccgagggccagcaggacggatacgaggctggcggtgccgatgatggcgag
gatgatgatgacggcgaggacgatgccgatgcgggcatcgagtccggcgtcaccgcggac
gctccggctgccgacgaggcggcacccgggctgaccaccagcttcgtgccgccgtccgat
ccgcagccggactattatgcgccgacgccggacgaggcatcggccccggctccggtcgag
gctccgcctgtcgaaacgacgcctgtcgcggaggtgccggccgaggcggctcctgccgag
gccacgtccgccgaagaggctcctgtcgagggggcgccgcgcaagcgcgcccgccgcgcc
accacgcgccgcccgcgcggtgcaaaggcggaggccgaagcggccgctgccgtagcttcg
ggcgaggcacctgctgcatcggaggctactgcgacggaggcccctgcccccgctgtcgag
gacgccaagccggcgccgcgtcgccgccgttccacggtgcgcgaaccggcgccgctgctg
aactccgacaccagcgcttcggtgacccaggaatcgctgccgctctcggtcgagccgcag
caaacgccggtcgagacgccggtcgagccggcgcctgctccggtggagagcgcgcccgag
cccgcggcgtcacacgaggcgccggaaccccaggccgccgagcccgccccggcagctccc
gaggcaccggcggcgcaggagcaggatgaccgcccgcgccgcaccggttggtggcagcgc
aagctgttcggcgtctga
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