Starkeya sp. ORNL1: G3545_10720
Help
Entry
G3545_10720 CDS
T06785
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3545_10720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
star03019
]
G3545_10720
03009 Ribosome biogenesis [BR:
star03009
]
G3545_10720
Messenger RNA biogenesis [BR:
star03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3545_10720
Ribosome biogenesis [BR:
star03009
]
Prokaryotic type
rRNA helicases
G3545_10720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJP14079
UniProt:
A0A858X2R2
LinkDB
All DBs
Position
2211999..2213945
Genome browser
AA seq
648 aa
AA seq
DB search
MPFMTSNPALARALAEREYDNPTPVQLAVLAPDSSGRDLLVSAQTGSGKTVAYGLAMADT
LLGTDERFALASAPQALVVAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLL
NQGAHIVVGTPGRLRDHLERGRLDISAVRVAVLDEADEMLDLGFREDLEFILDATPPERR
SLLFSATLPRGITALAKRYQREALRIEVASAEGGHADIEYRAIRINPSEVEHAVVNVLRF
YDASSAIVFCNTREKVRHLHATLQERQFSAVALSGELSQNERNQALQALRDGRARVCVAT
DVAARGIDLPSLGLVIHAELPNDAESLQHRSGRTGRAGRKGVSALLVAPFRRRRTEELLR
SLGITPVWSGPPTVDDIRKLDHERMLRDPVLTDEPSEDDAAAAHTLLAAHSAEHLAAALV
RLYRAGLPAPEEVADPGEPRGVRERAPRAFDGPSGAGGSAWFRLSIGRRNNADPRWLLPL
ICRRGNVTRKDIGVIRIFDEETAFEVGIDAVDRFSKALRKADGSDVVIEPLPGGPPVGRP
EGSGPGKAPHGKAPRGKPAHEKPPYEKAPREKPFRDKPFRDKPAQDKPGYGKAAHGKAAH
AKPEHAKPAHERPRGPKPAGQSTGERQLGSGRPNTFEGKPKGKKPRRP
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcatgacatccaatcccgcgctcgcccgcgctctggccgaacgcgaatacgac
aacccgacgccggtacagcttgccgtgctggcgcccgactcgtcgggacgcgacctgctg
gtttccgcgcagaccggctccggcaagaccgtggcgtatggcctcgccatggcggatacg
ctgctcggcaccgacgagcgcttcgccctggcgagcgcgccgcaggccctggtggtggcg
ccgacccgtgaactggcgctgcaggtgcagcgcgaattcgcgtggctctatgcggcgacc
ggcgcgcgcatcgtctcctgcgtcggcggcatggacccgcgccaggagcagcgcctgctc
aaccagggcgcccacatcgtggtcggcacgcccggacgcctgcgcgaccatctggagcgc
ggccggctcgacatctccgcggtgcgggtggccgtgctcgatgaagccgacgagatgctc
gacctcggcttccgcgaggacctcgaattcatcctcgacgccacgccgccggagcggcgc
agcctgttgttctcggcgacgctgccgcgcggcatcaccgcgcttgccaagcgctaccag
cgcgaagcgctgcgcatcgaggtggcgagcgcggaaggcggccacgccgacatcgagtac
cgcgccatccgcatcaacccgtcggaagtcgagcacgccgtcgtcaatgtgctgcgcttc
tacgacgcctccagcgccatcgtgttctgcaacacgcgcgagaaggtccggcacctgcac
gccacgcttcaggagcggcaattctccgcggtcgcgctgtccggcgaactcagccagaac
gagcgcaaccaggcgctccaggcgctgcgcgacggccgcgcgcgggtgtgtgtcgccacc
gatgtcgcggcgcgcggcatcgacctgccgagccttggcctcgtcatccatgccgagctg
ccgaacgacgcggagagcctgcagcaccgcagcgggcgcaccggacgggccggccgcaag
ggggtgagcgcgctgctggtggcgccgttccgccgtcgccgcaccgaggaactgctgagg
agcctcggtatcacgccggtatggtcggggccgccgaccgtggacgatatccgcaagctc
gaccacgagcgcatgctgcgcgaccctgtgctgaccgacgagccgagcgaggacgatgcc
gccgccgcccacacgctgcttgccgcgcactcggccgagcacctggctgcggcgctggtg
cgcctttatcgcgccgggctgccggcgccggaagaggtcgccgaccccggcgagccgcgc
ggcgttcgggagcgtgcgccgcgcgcgttcgacgggccgtcgggcgccggcggcagcgcg
tggttccgcctcagtatcggccgccgcaacaatgccgatccgcgctggctgctgccgctg
atctgccggcgcgggaacgtgacgcgcaaggatatcggcgtcatccgcatcttcgacgag
gagaccgcattcgaggtcggcatcgatgcggttgaccgcttcagcaaggcgctgcgcaag
gcggacggctccgacgtggtgatagagccgctgcccggcggccccccggtcggccgcccc
gaggggtccggcccggggaaggcaccgcatgggaaggcgccgcgcggcaagccggcgcat
gaaaaaccgccctacgaaaaggcgccgcgcgaaaagccgttccgggacaagccgttccgc
gacaagcctgcgcaggacaagcccggttacggcaaggcagcccacggaaaagctgcgcac
gcgaagcctgaacacgcgaagcccgctcacgagaggccgcgcgggccgaagcctgcgggc
cagagcaccggtgagcgacagctgggcagcggtcgaccgaacacgttcgagggcaagcca
aaaggaaagaagccgcgacgtccctga
DBGET
integrated database retrieval system
