Starkeya sp. ORNL1: G3545_25565
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Entry
G3545_25565 CDS
T06785
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
star
Starkeya sp. ORNL1
Brite
KEGG Orthology (KO) [BR:
star00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
star03016
]
G3545_25565 (thpR)
Enzymes [BR:
star01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
G3545_25565 (thpR)
Transfer RNA biogenesis [BR:
star03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
G3545_25565 (thpR)
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Gene cluster
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Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QJP16709
UniProt:
A0A858X8L1
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All DBs
Position
complement(5424922..5425455)
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AA seq
177 aa
AA seq
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MPRLFTALEIPPDIGATLASLRGGIPGARWISPEFYHVTLRFIGDVDYAVARDVASALDE
VERFGFELALDGVDQFGNHKPRAIFAAVRSNPALTELQAEQERLIKRVGLPPEGRNYKPH
VTLARLRDSAPSQVAEYLSIRGFYRSPTFEVPRFVLFSSRDSVGGGPYKVEASYPLM
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgccaaggctgtttaccgcgctagaaatccctccagacatcggcgccaccctcgcgagc
ttgcgcggtggcattccgggagcccgctggatatcccctgaattttaccatgtgacattg
cgcttcatcggcgatgtcgactacgcggtcgcccgcgatgtcgcctccgcgctggatgaa
gtcgagcgattcggcttcgaactggcactcgacggcgtcgaccagttcggcaatcacaag
ccccgcgccatcttcgccgcggtgaggtccaatccggcgctgaccgaattgcaggccgag
caggagcggctgatcaagcgcgtcggcctgccgccggaggggcgcaactacaagccccat
gtgacgctcgcgcggttgcgcgacagcgcacctagccaggttgccgaatacctctccatc
cgtggcttctaccgcagcccaaccttcgaggtgccgcgcttcgtgctgttctcctcccgc
gattcggtcggcggcggcccctacaaggtggaagcctcctatccgctgatgtga
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