Spongiibacter taiwanensis: NCG89_00965
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Entry
NCG89_00965 CDS
T08367
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCG89_00965 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staw03019
]
NCG89_00965 (rne)
03009 Ribosome biogenesis [BR:
staw03009
]
NCG89_00965 (rne)
Enzymes [BR:
staw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCG89_00965 (rne)
Messenger RNA biogenesis [BR:
staw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCG89_00965 (rne)
Ribosome biogenesis [BR:
staw03009
]
Prokaryotic type
rRNA processing factors
NCG89_00965 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USA43373
LinkDB
All DBs
Position
complement(174653..177646)
Genome browser
AA seq
997 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIENRTRVQKKANIYKGTITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFYRTPSDVSGRAKIKDLVKEGTEVIVQVEKEERGNKGAALTTF
ISLAGRYMVLMPNNPRAGGISRRIEGEDRSALKDALSSITIPDGMGVIVRTAGVGRSSEE
LQWDLDYLLHLASAIKQAATERKAPILILQESNVIIRAIRDYLRDDIDQVLIDGEDSFNE
AMHFVEQVMPHYKNKVRFYQDPVPLFNRYQIESQIESAFLREVQLPSGGSIVIDPTEALV
SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMMAAKNQREVE
NRVKDAMEADRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCSGQGTIRDTKSLA
LSILRLVEEEANKEKSAEIRAIVPVNVGAYLLNEKREAIQAIEQRCGVRVVVIPTPTLET
PHFDVQRLRENDLSEEAEVSYKIASELKAEAEAQEEEIAPAQPAPAAVVRTLAPKAPSPV
APAADPVAPVAAKPEAAAPSAPQQPGFFSRLGKGLATLFAGEPPKLETPVEPVEAPQEPS
EEKRQPKGNGERRNNQRNRNNRRGGDNRQNRNRNDNRGNRDDETSKAASNQEDAPKREKP
APQSQDDSSQEQDSSQNARPKRRPNNRKPRSPQERRRSKAPEDALPAEQRSNEASGEESA
DITPPVNASEDTAREKPARESRQRPRRERANRQEDKEARQNAVEQSSIAASEAAEVAETA
VEDAPAPASVTAEVVVEKSVVETAATDTAGTEEVADQTPAAQVTAAEPAVATEAPAEPVE
ANVKEDVAATAEPQATENPEESKHSVAAEASQPAAPETAEQAPKASFEAANAAEIGTEGD
QASDKADPVAAEATPEVDAPAPVIAPASAPAATVPSSTERVRPTGRAANDPRVAPKPVSQ
VDITTNRPRPPALDPSVMASPNPDRPVLPRAANDPRN
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaccagaggagttgcgcgttgccctggtcgat
ggccagcgactgtacgatctggatattgaaaaccgcacccgcgtccaaaagaaagccaat
atttataaaggcaccatcacccgggtggagcccagccttgaagcggcgttcgtggatttt
ggcgccgagcgtcacggctttctccccctcaaagaaatctccaaggaatatttctaccgc
accccctccgatgtcagcggtcgggccaagatcaaagatctggtcaaggaaggcaccgaa
gttatcgtccaggtagagaaagaagagcgtggcaataagggcgctgccctgaccaccttc
atcagcctcgctggccggtacatggtgctgatgcccaacaacccccgcgcgggcggtatc
tcccgccgcattgaaggtgaagatcgcagcgccctcaaagacgcccttagcagcattacc
atcccggacggcatgggcgtgattgtgcgcaccgcgggtgtcggtcgcagttccgaagaa
ttacagtgggatttggactacctgctccacttggcaagcgccatcaagcaggccgctacc
gagcgcaaagccccaattctgatcctgcaggaaagcaacgtcattatccgcgccattcgc
gactatctgcgcgacgatatcgaccaagtgttgattgatggcgaagattccttcaacgaa
gccatgcatttcgttgagcaggtcatgccccactacaaaaacaaggttcggttctaccag
gacccggtgccgctgtttaaccgctaccaaatcgaaagccagatcgaatccgccttcctc
cgtgaagtgcagctgccctcgggtggctccattgtgattgatccgaccgaggcgctggta
tcaatcgatatcaactctgcccgggccaccaagggtggcgatatcgaagaaaccgcgctg
cagaccaacctggaagccgccgacgagattgcccggcaattgcgcctgcgcgacatcggc
ggcctgatcgtggtcgacttcatcgacatgatggcggccaaaaaccagcgcgaagtcgag
aaccgggttaaagatgccatggaggccgatcgcgcccgggttcaggttggccggatctca
cggtttggtctgctggaaatgtcccgccagcgcctgcggccctcgctgggcgaaaccagc
gccaaagtctgccctcgctgcagcggtcaagggacgattcgcgacaccaaatccctcgcc
ttgtcgattctccgcctggttgaagaagaagccaataaagagaagagcgcggaaatccgt
gccattgtgccggtcaatgtcggcgcctacctgctcaatgaaaagcgcgaagccattcaa
gccattgaacagcgctgtggtgtacgcgtggtggtcattcccaccccgacgctggaaacg
ccccactttgacgttcagcgcctgcgggaaaatgacctgtcagaggaagccgaggtcagc
tacaaaatcgcttcagagttgaaagcagaggccgaagcgcaagaagaggaaatcgccccg
gcccagcccgcgccggctgctgtagtgcgtacattagcgccaaaggcgccctctcccgtc
gcaccagccgccgacccggtcgcaccagtggcggccaaacccgaagctgccgcgccgtcg
gcgccccaacaacccggtttcttcagccgtctcggcaagggtcttgccaccctgttcgcc
ggtgagccgccgaaactcgagacgccagtagaaccggttgaagcgccacaagaacccagc
gaagaaaaacgccagcccaagggcaatggtgagcgccgtaacaaccagcgcaatcgcaac
aatcgccgcggcggcgacaaccggcaaaaccgcaatcgcaatgacaatcgcggcaaccgg
gatgacgaaaccagtaaagccgccagcaatcaagaagatgcgccaaagcgggaaaagccg
gcccctcaatcccaggacgacagcagccaagagcaggatagcagccagaatgcacgtcca
aagcgtcgtcccaacaaccgcaagccgcgctcaccacaagagcgtcgccgcagcaaggca
ccagaagatgctttgccggccgaacagcgcagcaatgaggcttctggcgaggaaagcgct
gacatcaccccgccggtgaacgcaagcgaagacactgcccgggaaaagccagctcgcgaa
agcagacagcgcccccgtcgcgagcgcgccaaccgccaggaagacaaggaagcccgtcag
aatgcggttgaacaaagcagcatcgcagcgagcgaagccgctgaagttgccgaaaccgca
gtggaagacgcaccggcgcccgcctcagtcacagcggaggttgtggttgaaaaatcagta
gtagaaaccgccgctactgataccgcgggcactgaagaggtcgcggaccaaaccccagcg
gcgcaggttacggccgccgagcctgccgttgccacagaagctccggcagagccagtggag
gccaacgtgaaagaagacgtggccgccactgcagaaccacaggccaccgaaaaccctgag
gaatcgaagcactcggtcgcagcagaagccagccaaccggccgccccagagaccgccgag
caggcaccaaaggcctctttcgaggcagcaaatgccgcggaaattggcaccgagggtgac
caggccagcgacaaggcagaccccgttgccgccgaagcgaccccggaggtcgatgcgccc
gccccagtcattgccccggcatctgcgcctgcggcaaccgtgcccagtagcactgagcgt
gttcgacccaccggacgcgcagcgaacgaccccagagtggcgcccaagcccgtcagccag
gtggatattacgaccaatcggccgcgccctccggcgctggacccaagcgtaatggccagc
cccaaccctgaccgacccgtgctgcccagagccgcgaacgatccgcgcaactaa
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