Spongiibacter taiwanensis: NCG89_01925
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Entry
NCG89_01925 CDS
T08367
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
staw
Spongiibacter taiwanensis
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
staw03016
]
NCG89_01925 (rnd)
Enzymes [BR:
staw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCG89_01925 (rnd)
Transfer RNA biogenesis [BR:
staw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCG89_01925 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
USA43556
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All DBs
Position
complement(376888..377997)
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AA seq
369 aa
AA seq
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MTDFSYIDSNAGLSTLCERAASADFVALDTEFIRTDTFYPIAGLVQVGVGGRSYLIDPLE
IDDWAPLVALFADESLVKVIHSCSEDLEVFQRLLGCLPRPLLDTQIGAALAGLGGGMSYQ
RLVEAVSGVHVEKGETRSDWLQRPLSDRQCLYAALDVDHLQGVYQALRGSLERQGRLQWW
WDECEQMMTSAASPAGNEGYYLRVKGGWKLRGKHLLLLQRLCEWREQQAQEQDVPRGRVL
KDQACFDIALKSPGNVNQLAGIKEVSPKLVRRHGEGILDIVSSAMTAAESEYPLPIPAPP
SGDDLRKFKSLREFVQVESEKLSLPPELVLKKKEMESLVRDGRWPDNLPGWRKTVLGDGL
GRFLKVQGA
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgactgattttagttatatagacagtaacgcgggcttgtcgacgctgtgcgagcgggct
gcttcggccgactttgtggcgctcgataccgagtttattcggaccgatacgttttatccc
attgccggactggtgcaggtcggggtgggtgggcgttcctatttgattgatccactggag
atcgacgactgggcgccattagtcgcgctgtttgctgatgagagtctggttaaagtgatc
cactcctgcagcgaggatttggaggtcttccagcgtttgctcggttgtttgccccggcca
ctgcttgatacccaaatcggtgcagctctggccgggctgggcgggggaatgagctatcag
cgcctggtggaggcggtttctggtgttcatgttgaaaaaggcgaaacccgttccgattgg
cttcagcgaccgctgagcgatcgccagtgtctgtacgcggccctcgatgttgatcacctt
cagggcgtgtatcaggcgctgaggggaagtctggagcgtcagggaaggctgcaatggtgg
tgggacgagtgcgagcaaatgatgaccagtgccgcatcaccggccggaaacgaaggctat
taccttcgcgtcaaaggcggctggaagctgcgtggcaagcatctgctgctactgcagcga
ctgtgcgagtggcgggagcagcaagcgcaggagcaggatgtgcccagaggccgggtactc
aaagatcaggcttgcttcgacattgccttgaaaagccccggcaacgtgaaccaactggcc
ggcataaaggaagtcagcccgaagctggtgcggcgccatggcgaggggattttggatatt
gtttcctcggcaatgacagcagcagagagcgagtatcctctcccgattcccgcaccgcct
tccggggatgatttgagaaaattcaaaagtttgcgggaatttgttcaggttgaatctgaa
aaattatcgctcccaccggagttggtgttgaagaagaaagagatggaaagcctagtgcgt
gatggtcgctggcccgacaatttgccgggctggcgtaaaaccgtgttgggtgacgggctc
ggccgatttctgaaagtgcagggggcctga
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