Spongiibacter taiwanensis: NCG89_02020
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Entry
NCG89_02020 CDS
T08367
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
staw
Spongiibacter taiwanensis
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
staw03019
]
NCG89_02020 (hrpA)
Enzymes [BR:
staw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCG89_02020 (hrpA)
Messenger RNA biogenesis [BR:
staw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCG89_02020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
MPAB_Lcp_cat
NACHT
WHD_HA2
nSTAND_NTPase5
ResIII
T2SSE
AAA_23
ABC_tran
NTPase_1
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
USA43573
LinkDB
All DBs
Position
complement(394473..398363)
Genome browser
AA seq
1296 aa
AA seq
DB search
MPEASLQPYFDALADCYLADQPGLRRRLRQLSERDLVTEVAGGRLADIRQRIDASIARRR
ERLEALPRVSYPPQLPVSERVADLREAIRDHQVVIIAGETGSGKTTQIPKICLELGRGVA
GMIGHTQPRRLAARTVAQRLAEELNTPLGEGVGYQVRFQDVSGPLSHIKVMTDGVLLAAI
NHDRLLYQYDTLIIDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDVDRFAAHFD
QAPVVEVSGRSFPVEYRYRPMEESETGNDVPAAIESALEELVEEGASRRGDVLVFLSGER
EIREVHRHLRHCTIPNLEVLPLYARLSNAEQQRIFDLGGRRGWRVVLATNVAETSLTVPG
IHFVIDAGTARISRYSVRSKVQRLPIEPVSQASANQRAGRCGRLAPGIAYRLYSEEDFQR
RPAFTDPEIQRTNLAAVILQMLQLGLGDIEKFPFIDPPDRRQVNDGYGLLQELAAVSGRR
LNPLGKRLAQLPVDPRIGRLLLAAAEKGCLREMLIIASALSIQDPRERPADKQQAADEKH
RRFRDEDSDFLAFLSLWDYAEEQRQALSSNQWRKLCQKEFLSWTRMREWREVHHQLMLLC
RQLKLTLNKEPADYNRLHQALLPGFLSQIAFKTEERDYLGARNRKLRIFPGSALAKKKPK
WIVAAELAETSQLFARCVARIEPDWVLGINDDLLKRRYYEPHYQAKTGRVVAFEQTLLFG
LLLRDKQRVGYGPINPQESREIFIRQALVEGRYRGKADFFRHNKALIEEIAGLEDKTRRR
DILASDEELFRFYDERLPDSVISDRHLHSWLNKQAGDKALQLSRGDAMRIADLDAAETQF
PDSLHWAGHWLPLKYHFEPGHPADGVTVLLPLALLDKVAGARLDWLVPGLLREKCIALVK
ALPKAQRKQLVPVPDYVDRALARLQPSETPLMEALAVQLKGLASVDIDLQAWSEQQVDDY
YRMNIRVLDDAGRALAESRDLAALRRKLSHRVQASIAQETGNGFASREVDSWDFGDLPAE
HRFRQGGATLTAYPCLRAEGGKVELVLAESADQAARQSKVGVQRLLMLRLGQQVKMLRKN
LFSDNTQQLQFAACQQDRRRWTEDALLAAVAEAFQVNQDSLPRTEAEFETVWERGRAEYI
PTAERYGALLSDILSQFSDLSRRLKKLNNLALVQSVNDIRGQLARLFTVDFIIDLGLAEL
QQYPRYLKAIGQRLDKLEGNYQRDRQCTLTLAPLQEQLDSTLAKNPDALNIPALRDYRWM
LEEFRVSLFAQQLGTAFPVSEKRLKQAWKALVPALS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggcatctctacagccctacttcgacgcacttgcagattgctacctggcagat
cagcccggcttgcggcgccgtttgcgacagctcagcgagcgtgaccttgtcaccgaagtg
gcgggcgggcgactcgccgacattcgccagcgtatcgatgcgtcgatagcgcgccgccgc
gaacgtcttgaggccctgccccgggtgagttacccgcctcaactcccggtcagcgaacgg
gtagccgacctgcgcgaggctattcgcgatcatcaggtggtcattattgccggtgagacc
ggctcgggcaaaaccacgcagattcctaaaatctgcctggaattagggcgtggggtcgca
gggatgattggccacacccaaccccggcggctggcggcgcgcacggtggcccagcgcctg
gctgaagagctaaatacgccccttggggagggggtggggtaccaggtgcgttttcaagat
gtgagtggccctctcagtcatatcaaagtgatgaccgacggggtactcctggccgccatt
aaccacgatcgactgttgtaccagtacgacacgctgattattgatgaggcccacgaacgc
agtctcaatatcgacttcttgctgggttatctcaaaaccctgctgccgcgtcggccggat
ctcaaactgatcatcacgtccgccacaattgatgtggaccgctttgccgcccattttgat
caggcgccggtggttgaggtcagtggccgcagtttcccggtggaataccgctatcggccg
atggaagaatccgagacgggcaatgatgtgccggcggcaatcgagtctgccctggaggag
ttggttgaagagggcgcatcccgccggggtgatgtattggtgtttcttagcggtgagcgg
gaaatccgcgaggttcaccggcaccttcgccattgcaccattcccaatttggaagtcctg
ccgctctatgcccgcctgagcaacgcagaacagcagcggatttttgatctgggcggccgc
cgcggctggcgggtcgtgctggccaccaacgtggcggaaacctcgctgacagttcccgga
atacactttgtgattgatgcaggtaccgcccggataagtcgctacagcgtgcgcagcaag
gtgcagagactgcctatcgaaccggtctcccaggccagcgccaatcagcgcgcgggacgt
tgtggtcgccttgcgcccggcattgcttaccgcctgtatagcgaggaggactttcagcgg
cgaccggcctttaccgacccagaaattcagcgcactaatctggcggcggtcattctgcaa
atgttgcagcttggtcttggggatatcgaaaaatttccctttatcgatcccccggaccgg
cgtcaggtgaacgatggctacggcttgctgcaggaactggcggccgtgtccggtcgacgg
ttgaacccgctgggtaaacgcctggcgcagttgccggtcgatccgcggatcggccgtctg
ttgttggcagcggcagagaaaggctgcctgcgggaaatgttaatcatcgccagtgcgctt
agtatccaggacccacgcgaacggcctgcggacaagcaacaggccgcggatgaaaagcat
cgccgttttcgcgatgaagattccgactttctggcctttttgtcgctctgggattacgcc
gaggaacagcgtcaggcgctatcgagcaatcagtggcgcaagctgtgccagaaggagttt
ttgtcctggacccggatgcgcgagtggcgcgaggttcaccatcaactgatgctgttgtgc
cggcagttgaaactgaccctcaataaggagcccgcggactacaaccgattgcatcaggcc
ttgctgcccggctttttgagccagatagcctttaaaaccgaggagcgtgactaccttggt
gcccgcaaccgtaaactgcgcattttccccggctcggcactggctaagaaaaagccaaag
tggattgtggcggcggagctggccgaaaccagccagctgttcgcgcgctgtgttgcccgc
atcgagcctgactgggtattggggattaatgacgatttgctgaagcgtcgttactacgag
ccccactatcaggccaaaaccggtcgcgtggtggcctttgagcaaaccctgttatttggc
ttgctgctgcgagataaacagcgggtaggttacggcccgatcaatccccaggagagcagg
gagattttcattcgtcaggcgctggtggaagggcggtaccgcggtaaagccgatttcttt
cgccacaataaggccttgattgaagagatcgccggcctcgaggacaaaacccggcggcgg
gatatccttgcctctgacgaagagctgttccgtttctacgacgagcgtttgcccgattcg
gtgatttctgaccggcatctgcacagctggcttaacaaacaggctggcgacaaggcgttg
cagctcagtcgcggtgatgccatgcgcattgccgacctcgacgcggcggagacccaattt
ccggattcactgcattgggccggtcattggttacccttgaagtatcacttcgagcccggc
catcccgcagacggcgtaacggttttgcttccgctggcgctgctggacaaagtcgctggt
gcgcgactcgattggctggtgccgggcttgctgcgcgaaaaatgcattgccttggtcaag
gcgctacccaaggctcagcgcaagcagttggtaccggtgccggattatgtggatcgggcg
ttggcgcgtttgcagcctagcgaaaccccgctgatggaagcactggcggtgcagctcaaa
gggctcgcctccgtggacattgatctgcaagcctggtccgagcagcaagttgatgactat
tatcgaatgaatattcgggtgctggatgatgcaggccgggcgctggctgaaagccgggat
ttggcggcgctgcggcgcaaattgagccatcgtgtacaggccagtattgcccaggaaacc
ggtaatggctttgcctcgcgggaagtcgacagttgggattttggcgatttgcctgcggag
caccgcttccgccagggcggggcaactctcaccgcttacccctgccttcgggccgagggc
ggtaaggttgagctggtgctggcggaatcagccgatcaagcagcccggcagagcaaagtc
ggcgtgcagcggttactgatgttgcgcttgggacagcaggtcaagatgctgcgcaaaaac
ctgttcagtgataatacccagcagttacagtttgccgcctgtcagcaggaccggcgccgc
tggacagaggatgccttgctagccgccgttgccgaggccttccaggtgaaccaggactct
ctgccccgcaccgaggccgagtttgagactgtttgggagcgggggcgggctgaatatata
ccgacggcagagcgctatggtgcgctgttgagcgatattctgtcccagttcagtgacctg
agtcggcggctgaaaaagctcaataatctggccttggtgcagtcggtaaatgatattcgt
ggccagctggccaggctatttaccgtcgatttcatcatcgacttgggcttggcagagctg
caacagtatcctcgctatctaaaggccatcggccagcgattggacaagttggaggggaat
tatcagcgcgatcgccagtgcacgctcacattggcaccgttgcaggaacagctggatagt
accttggcgaaaaaccccgatgccctgaacattccagccttgagagactatcgctggatg
ctggaggaatttcgggtatcgttgtttgcgcagcagttgggcacggccttcccggtgtcg
gaaaagcgcctaaagcaagcctggaaagcgcttgttccggcactcagttga
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